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鸡蛋清溶菌酶单斜晶体的结构相变

Structural phase transition of monoclinic crystals of hen egg-white lysozyme.

作者信息

Harata Kazuaki, Akiba Toshihiko

机构信息

Biological Information Research Center, National Institute of Advanced Industrial Science and Technology (AIST), Central 6, 1-1-1 Higashi, Tsukuba, Ibaraki 305-8566, Japan.

出版信息

Acta Crystallogr D Biol Crystallogr. 2006 Apr;62(Pt 4):375-82. doi: 10.1107/S0907444906001314. Epub 2006 Mar 18.

Abstract

Two monoclinic crystals (space group P2(1)) of hen egg-white lysozyme, a type I crystal grown at room temperature in a D2O solution with pD 4.5 containing 2%(w/v) sodium nitrate and a type II crystal grown at 313 K in a 10%(w/v) sodium chloride solution with pH 7.6, were each transformed into another monoclinic crystal with the same space group by dehydration-induced phase transition. Changes in X-ray diffraction were recorded to monitor the progress of the crystal transformation, which started with the appearance of diffuse streaks. In both crystals, the intensity of h + l odd reflections gradually weakened and finally disappeared on completion of the transformation. X-ray diffraction in the intermediate state indicated the presence of lattices of both the native and transformed crystals. In the native type I crystal, two alternate conformations were observed in the main chain of the region Gly71-Asn74. One conformer bound a sodium ion which was replaced with a water molecule in the other conformer. In the transformed crystal, the sodium ion was removed and the main-chain conformation of this region was converted to that of the water-bound form. The transformed crystal diffracted to a higher resolution than the native crystal, while the peak width of the diffraction spots increased. Analysis of the thermal motion of protein molecules using the TLS model has shown that the enhancement of the diffraction power in the transformed crystal is mainly ascribable to the suppression of rigid-body motion owing to an increase in intermolecular contacts as a result of the loss of bulk solvent.

摘要

两种单斜晶体(空间群P2(1))的鸡蛋清溶菌酶,一种是在含2%(w/v)硝酸钠、pD 4.5的重水溶液中于室温下生长的I型晶体,另一种是在pH 7.6的10%(w/v)氯化钠溶液中于313 K下生长的II型晶体,通过脱水诱导的相变各自转变为具有相同空间群的另一种单斜晶体。记录X射线衍射的变化以监测晶体转变的进程,该进程始于漫散条纹的出现。在两种晶体中,h + l为奇数的反射强度逐渐减弱,在转变完成时最终消失。中间状态的X射线衍射表明存在天然晶体和转变后晶体的晶格。在天然I型晶体中,在Gly71 - Asn74区域的主链中观察到两种交替构象。一种构象结合一个钠离子,在另一种构象中该钠离子被一个水分子取代。在转变后的晶体中,钠离子被去除,该区域的主链构象转变为与水结合形式的构象。转变后的晶体比天然晶体衍射到更高的分辨率,而衍射斑点的峰宽增加。使用TLS模型对蛋白质分子的热运动进行分析表明,转变后晶体中衍射能力的增强主要归因于由于大量溶剂的丧失导致分子间接触增加从而抑制了刚体运动。

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