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自由能差中系统计算误差的理论

Theory of a systematic computational error in free energy differences.

作者信息

Zuckerman Daniel M, Woolf Thomas B

机构信息

Department of Physiology, Johns Hopkins University School of Medicine, Baltimore, Maryland 21205, USA.

出版信息

Phys Rev Lett. 2002 Oct 28;89(18):180602. doi: 10.1103/PhysRevLett.89.180602. Epub 2002 Oct 15.

DOI:10.1103/PhysRevLett.89.180602
PMID:12398588
Abstract

Systematic inaccuracy is inherent in any computational estimate of a nonlinear average, due to the availability of only a finite number of data values, N. Free energy differences (Delta)F between two states or systems are critically important examples of such averages. Previous work has demonstrated, empirically, that the "finite-sampling error" can be very large--many times k(B)T--in (Delta)F estimates for simple molecular systems. Here we present a theoretical description of the inaccuracy, including the exact solution of a sample problem, the precise asymptotic behavior in terms of 1/N for large N, the identification of a universal law, and numerical illustrations. The theory relies on corrections to the central and other limit theorems.

摘要

由于仅能获得有限数量的数据值(N),任何非线性平均值的计算估计都存在系统性误差。两个状态或系统之间的自由能差(\Delta F)就是此类平均值的重要示例。先前的工作已通过实验证明,对于简单分子系统,在(\Delta F)估计中“有限采样误差”可能非常大——可达(k_BT)的许多倍。在此,我们给出了误差的理论描述,包括一个示例问题的精确解、大(N)时关于(1/N)的精确渐近行为、一条通用定律的确定以及数值示例。该理论依赖于对中心极限定理和其他极限定理的修正。

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