Damberg Peter, Jarvet Jüri, Allard Peter, Mets Ulo, Rigler Rudolf, Gräslund Astrid
Department of Biochemistry and Biophysics, Arrhenius Laboratories, Stockholm University, S-106 91 Stockholm, Sweden.
Biophys J. 2002 Nov;83(5):2812-25. doi: 10.1016/S0006-3495(02)75290-9.
Tyrosine ring dynamics of the gastrointestinal hormone motilin was studied using two independent physical methods: fluorescence polarization anisotropy decay and NMR relaxation. Motilin, a 22-residue peptide, was selectively (13)C labeled in the ring epsilon-carbons of the single tyrosine residue. To eliminate effects of differences in peptide concentration, the same motilin sample was used in both experiments. NMR relaxation rates of the tyrosine ring C(epsilon)-H(epsilon) vectors, measured at four magnetic field strengths (9.4, 11.7, 14.1, and 18.8 Tesla) were used to map the spectral density function. When the data were analyzed using dynamic models with the same number of components, the dynamic parameters from NMR and fluorescence are in excellent agreement. However, the estimated rotational correlation times depend on the choice of dynamic model. The correlation times estimated from the two-component model-free approach and the three-component models were significantly different (1.7 ns and 2.2 ns, respectively). Various earlier studies of protein dynamics by NMR and fluorescence were compared. The rotational correlation times estimated by NMR for samples with high protein concentration were on average 18% longer for folded monomeric proteins than the corresponding times estimated by fluorescence polarization anisotropy decay, after correction for differences in viscosity due to temperature and D(2)O/H(2)O ratio.
荧光偏振各向异性衰减和核磁共振弛豫。胃动素是一种由22个氨基酸组成的肽,在单个酪氨酸残基的环ε-碳原子上进行了选择性的(13)C标记。为了消除肽浓度差异的影响,两个实验使用了相同的胃动素样品。在四个磁场强度(9.4、11.7、14.1和18.8特斯拉)下测量的酪氨酸环C(ε)-H(ε)向量的核磁共振弛豫率用于绘制光谱密度函数。当使用具有相同组分数的动力学模型分析数据时,核磁共振和荧光的动力学参数非常吻合。然而,估计的旋转相关时间取决于动力学模型的选择。从无模型双组分方法和三组分模型估计的相关时间有显著差异(分别为1.7纳秒和2.2纳秒)。比较了早期通过核磁共振和荧光对蛋白质动力学进行的各种研究。在校正了由于温度和D(2)O/H(2)O比率导致的粘度差异后,对于高蛋白质浓度的样品,通过核磁共振估计的折叠单体蛋白质的旋转相关时间平均比通过荧光偏振各向异性衰减估计的相应时间长18%。