• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

RNA干扰介导的PTB缺失导致外显子定义增强。

RNAi-mediated PTB depletion leads to enhanced exon definition.

作者信息

Wagner Eric J, Garcia-Blanco Mariano A

机构信息

Department of Molecular Genetics and Microbiology, Duke University Medical Center, Durham, NC 27710, USA.

出版信息

Mol Cell. 2002 Oct;10(4):943-9. doi: 10.1016/s1097-2765(02)00645-7.

DOI:10.1016/s1097-2765(02)00645-7
PMID:12419237
Abstract

Mutually exclusive use of exons IIIb or IIIc in FGF-R2 transcripts requires the silencing of exon IIIb. This repression is mediated by silencer elements upstream and downstream of the exon. Both silencers bind the polypyrimidine tract binding protein (PTB) and PTB binding sites within these elements are required for efficient silencing of exon IIIb. Recruitment of MS2-PTB fusion proteins upstream or downstream of exon IIIb causes repression of this exon. Depletion of endogenous PTB using RNAi increases exon IIIb inclusion in transcripts derived from minigenes and from the endogenous FGF-R2 gene. These data demonstrate that PTB is a negative regulator of exon definition in vivo.

摘要

FGF-R2转录本中外显子IIIb或IIIc的互斥使用需要外显子IIIb的沉默。这种抑制作用由该外显子上下游的沉默子元件介导。两个沉默子均与多嘧啶序列结合蛋白(PTB)结合,并且这些元件内的PTB结合位点对于外显子IIIb的有效沉默是必需的。在外显子IIIb上游或下游募集MS2-PTB融合蛋白会导致该外显子的抑制。使用RNAi耗尽内源性PTB会增加来自小基因和内源性FGF-R2基因的转录本中外显子IIIb的包含率。这些数据表明,PTB在体内是外显子界定的负调节因子。

相似文献

1
RNAi-mediated PTB depletion leads to enhanced exon definition.RNA干扰介导的PTB缺失导致外显子定义增强。
Mol Cell. 2002 Oct;10(4):943-9. doi: 10.1016/s1097-2765(02)00645-7.
2
An intronic splicing silencer causes skipping of the IIIb exon of fibroblast growth factor receptor 2 through involvement of polypyrimidine tract binding protein.一个内含子剪接沉默子通过多嘧啶序列结合蛋白的参与导致成纤维细胞生长因子受体2的IIIb外显子跳跃。
Mol Cell Biol. 2000 Oct;20(19):7388-400. doi: 10.1128/MCB.20.19.7388-7400.2000.
3
Characterization of the intronic splicing silencers flanking FGFR2 exon IIIb.成纤维细胞生长因子受体2(FGFR2)基因外显子IIIb侧翼内含子剪接沉默子的特征分析
J Biol Chem. 2005 Apr 8;280(14):14017-27. doi: 10.1074/jbc.M414492200. Epub 2005 Jan 31.
4
An intronic sequence element mediates both activation and repression of rat fibroblast growth factor receptor 2 pre-mRNA splicing.一个内含子序列元件介导大鼠成纤维细胞生长因子受体2前体mRNA剪接的激活和抑制。
Mol Cell Biol. 1998 Apr;18(4):2205-17. doi: 10.1128/MCB.18.4.2205.
5
A novel intronic cis element, ISE/ISS-3, regulates rat fibroblast growth factor receptor 2 splicing through activation of an upstream exon and repression of a downstream exon containing a noncanonical branch point sequence.一种新型内含子顺式元件ISE/ISS-3,通过激活上游外显子和抑制包含非经典分支点序列的下游外显子来调节大鼠成纤维细胞生长因子受体2的剪接。
Mol Cell Biol. 2005 Jan;25(1):250-63. doi: 10.1128/MCB.25.1.250-263.2005.
6
5'- and 3'-terminal nucleotides in the FGFR2 ISAR splicing element core have overlapping roles in exon IIIb activation and exon IIIc repression.FGFR2 ISAR剪接元件核心区域的5'端和3'端核苷酸在激活外显子IIIb和抑制外显子IIIc方面具有重叠作用。
Nucleic Acids Res. 2001 Sep 1;29(17):3557-65. doi: 10.1093/nar/29.17.3557.
7
MAZ elements alter transcription elongation and silencing of the fibroblast growth factor receptor 2 exon IIIb.MAZ元件改变成纤维细胞生长因子受体2外显子IIIb的转录延伸和沉默。
J Biol Chem. 2004 Jul 9;279(28):29075-84. doi: 10.1074/jbc.M312747200. Epub 2004 May 4.
8
A stem structure in fibroblast growth factor receptor 2 transcripts mediates cell-type-specific splicing by approximating intronic control elements.成纤维细胞生长因子受体2转录本中的茎结构通过接近内含子控制元件介导细胞类型特异性剪接。
Mol Cell Biol. 2003 Dec;23(24):9327-37. doi: 10.1128/MCB.23.24.9327-9337.2003.
9
Polypyrimidine tract-binding protein represses splicing of a fibroblast growth factor receptor-2 gene alternative exon through exon sequences.聚嘧啶序列结合蛋白通过外显子序列抑制成纤维细胞生长因子受体2基因可变外显子的剪接。
J Biol Chem. 2001 Nov 23;276(47):43677-87. doi: 10.1074/jbc.M107381200. Epub 2001 Sep 13.
10
A Non-sequence-specific double-stranded RNA structural element regulates splicing of two mutually exclusive exons of fibroblast growth factor receptor 2 (FGFR2).一种非序列特异性双链RNA结构元件调节成纤维细胞生长因子受体2(FGFR2)两个相互排斥外显子的剪接。
J Biol Chem. 2002 Dec 20;277(51):50143-54. doi: 10.1074/jbc.M207409200. Epub 2002 Oct 21.

引用本文的文献

1
Structural insights into the cross-exon to cross-intron spliceosome switch.结构洞察跨外显子到跨内含子剪接体开关。
Nature. 2024 Jun;630(8018):1012-1019. doi: 10.1038/s41586-024-07458-1. Epub 2024 May 22.
2
Alternative splicing in EMT and TGF-β signaling during cancer progression.癌症进展过程中 EMT 和 TGF-β 信号转导中的可变剪接。
Semin Cancer Biol. 2024 Jun;101:1-11. doi: 10.1016/j.semcancer.2024.04.001. Epub 2024 Apr 15.
3
The discovery, function, and regulation of epithelial splicing regulatory proteins (ESRP) 1 and 2.
上皮剪接调节蛋白(ESRP)1 和 2 的发现、功能和调节。
Biochem Soc Trans. 2023 Jun 28;51(3):1097-1109. doi: 10.1042/BST20221124.
4
The RNA helicase DDX39B activates FOXP3 RNA splicing to control T regulatory cell fate.RNA 解旋酶 DDX39B 通过激活 FOXP3 RNA 剪接来控制 T 调节性细胞命运。
Elife. 2023 Jun 1;12:e76927. doi: 10.7554/eLife.76927.
5
Aire-dependent transcripts escape Raver2-induced splice-event inclusion in the thymic epithelium.依赖 Aire 的转录本逃避了胸腺上皮细胞中 Raver2 诱导的剪接事件包含。
EMBO Rep. 2022 Feb 3;23(3):e53576. doi: 10.15252/embr.202153576. Epub 2022 Jan 17.
6
An atlas of alternative polyadenylation quantitative trait loci contributing to complex trait and disease heritability.一个替代性多聚腺苷酸化数量性状基因座图谱,有助于复杂性状和疾病遗传率。
Nat Genet. 2021 Jul;53(7):994-1005. doi: 10.1038/s41588-021-00864-5. Epub 2021 May 13.
7
U2AF2 binds IL7R exon 6 ectopically and represses its inclusion.U2AF2异位结合IL7R外显子6并抑制其包含。
RNA. 2021 Feb 10;27(5):571-83. doi: 10.1261/rna.078279.120.
8
Activation and inhibition of nonsense-mediated mRNA decay control the abundance of alternative polyadenylation products.无义介导的 mRNA 降解的激活和抑制控制可变多聚腺苷酸化产物的丰度。
Nucleic Acids Res. 2020 Jul 27;48(13):7468-7482. doi: 10.1093/nar/gkaa491.
9
Nudt21 regulates the alternative polyadenylation of Pak1 and is predictive in the prognosis of glioblastoma patients.Nudt21 调控 Pak1 的可变多聚腺苷酸化,并且可预测胶质母细胞瘤患者的预后。
Oncogene. 2019 May;38(21):4154-4168. doi: 10.1038/s41388-019-0714-9. Epub 2019 Jan 31.
10
RNA processing in skeletal muscle biology and disease.骨骼肌生物学与疾病中的RNA加工
Transcription. 2019 Feb;10(1):1-20. doi: 10.1080/21541264.2018.1558677. Epub 2019 Jan 15.