Castellani Federica, van Rossum Barth, Diehl Annette, Schubert Mario, Rehbein Kristina, Oschkinat Hartmut
Forschungsinstitut für Molekulare Pharmakologie, Robert-Rössle-Strasse 10, 13125 Berlin, Germany.
Nature. 2002 Nov 7;420(6911):98-102. doi: 10.1038/nature01070.
The determination of a representative set of protein structures is a chief aim in structural genomics. Solid-state NMR may have a crucial role in structural investigations of those proteins that do not easily form crystals or are not accessible to solution NMR, such as amyloid systems or membrane proteins. Here we present a protein structure determined by solid-state magic-angle-spinning (MAS) NMR. Almost complete (13)C and (15)N resonance assignments for a micro-crystalline preparation of the alpha-spectrin Src-homology 3 (SH3) domain formed the basis for the extraction of a set of distance restraints. These restraints were derived from proton-driven spin diffusion (PDSD) spectra of biosynthetically site-directed, labelled samples obtained from bacteria grown using [1,3-(13)C]glycerol or [2-(13)C]glycerol as carbon sources. This allowed the observation of long-range distance correlations up to approximately 7 A. The calculated global fold of the alpha-spectrin SH3 domain is based on 286 inter-residue (13)C-(13)C and six (15)N-(15)N restraints, all self-consistently obtained by solid-state MAS NMR. This MAS NMR procedure should be widely applicable to small membrane proteins that can be expressed in bacteria.
确定一组具有代表性的蛋白质结构是结构基因组学的主要目标。固态核磁共振(NMR)在那些不易形成晶体或无法用溶液NMR研究的蛋白质(如淀粉样蛋白系统或膜蛋白)的结构研究中可能起着关键作用。在此,我们展示了一个通过固态魔角旋转(MAS)NMR确定的蛋白质结构。对α-血影蛋白Src同源3(SH3)结构域微晶制剂几乎完整的(13)C和(15)N共振归属构成了提取一组距离限制的基础。这些限制源自使用[1,3-(13)C]甘油或[2-(13)C]甘油作为碳源培养的细菌所获得的生物合成位点定向标记样品的质子驱动自旋扩散(PDSD)光谱。这使得能够观察到长达约7埃的长程距离相关性。α-血影蛋白SH3结构域的计算全局折叠基于286个残基间的(13)C-(13)C和六个(15)N-(15)N限制,所有这些都是通过固态MAS NMR自洽获得的。这种MAS NMR方法应广泛适用于可在细菌中表达的小膜蛋白。