Irimia Adriana, Ebel Christine, Madern Dominique, Richard Stéphane B, Cosenza Lawrence W, Zaccaï Giuseppe, Vellieux Frédéric M D
Laboratoire de Biophysique Moléculaire, Institut de Biologie Structurale J.-P. Ebel CEA CNRS UJF UMR-5075, 41 rue Jules Horowitz, 38027 Grenoble Cedex 01, France.
J Mol Biol. 2003 Feb 21;326(3):859-73. doi: 10.1016/s0022-2836(02)01450-x.
The three-dimensional crystal structure of the (R207S, R292S) mutant of malate dehydrogenase from Haloarcula marismortui was solved at 1.95A resolution in order to determine the role of salt bridges and solvent ions in halophilic adaptation and quaternary structure stability. The mutations, located at the dimer-dimer interface, disrupt two inter-dimeric salt bridge clusters that are essential for wild-type tetramer stabilisation. Previous experiments in solution, performed on the double mutant, had shown a tetrameric structure in 4M NaCl, which dissociated into active dimers in 2M NaCl. In order to establish if the active dimeric form is a product of the mutation, or if it also exists in the wild-type protein, complementary studies were performed on the wild-type enzyme by analytical centrifugation and small angle neutron scattering experiments. They showed the existence of active dimers in NaF, KF, Na(2)SO(4), even in the absence of NADH, and in the presence of NADH at concentrations of NaCl below 0.3M. The crystal structure shows a tetramer that, in the absence of the salt bridge clusters, appears to be stabilized by a network of ordered water molecules and by Cl(-) binding at the dimer-dimer interface. The double mutant and wild-type dimer folds are essentially identical (the r.m.s. deviation between equivalent C(alpha) positions is 0.39A). Chloride ions are also observed at the monomer-monomer interfaces of the mutant, contributing to the stability of each dimer against low salt dissociation. Our results support the hypothesis that extensive binding of water and salt is an important feature of adaptation to a halophilic environment.
为了确定盐桥和溶剂离子在嗜盐适应和四级结构稳定性中的作用,解析了来自死海嗜盐菌(Haloarcula marismortui)的苹果酸脱氢酶(R207S, R292S)突变体的三维晶体结构,分辨率为1.95埃。这些突变位于二聚体 - 二聚体界面,破坏了两个对野生型四聚体稳定至关重要的二聚体间盐桥簇。之前对该双突变体进行的溶液实验表明,在4M NaCl中其为四聚体结构,而在2M NaCl中会解离成活性二聚体。为了确定活性二聚体形式是突变的产物,还是也存在于野生型蛋白中,通过分析超速离心和小角中子散射实验对野生型酶进行了补充研究。结果表明,即使在没有NADH的情况下,以及在NaCl浓度低于0.3M且存在NADH时,在NaF、KF、Na₂SO₄中也存在活性二聚体。晶体结构显示,在没有盐桥簇的情况下,四聚体似乎通过有序水分子网络和二聚体 - 二聚体界面处的Cl⁻结合而得以稳定。双突变体和野生型二聚体的折叠基本相同(等效Cα位置之间的均方根偏差为0.39埃)。在突变体的单体 - 单体界面也观察到了氯离子,这有助于每个二聚体抵抗低盐解离的稳定性。我们的结果支持了这样的假设,即水和盐的广泛结合是适应嗜盐环境的一个重要特征。