Bismuto Ettore, Febbraio Ferdinando, Limongelli Simona, Briante Raffaella, Nucci Roberto
Dipartimento di Biochimica e Biofisica, Seconda Università di Napoli, Napoli, Italy.
Proteins. 2003 Apr 1;51(1):10-20. doi: 10.1002/prot.10317.
Multiple sequence alignment on 73 proteins belonging to glycosyl hydrolase family 1 reveals the occurrence of a segment (83-124) in the enzyme sequences from hyperthermophilic archaea bacteria, which is absent in all the mesophilic members of the family. The alignment of the known three-dimensional structures of hyperthermophilic glycosidases with the known ones from mesophilic organisms shows a similar spatial organizations of beta-glycosidases except for this sequence segment whose structure is located on the external surface of each of four identical subunits, where it overlaps two alpha-helices. Site-directed mutagenesis substituting N97 or S101 with a cysteine residue in the sequence of beta-glycosidase from hyperthermophilic archaeon Sulfolobus solfataricus caused some changes in the structural and dynamic properties as observed by circular dichroism in far- and near-UV light, as well as by frequency domain fluorometry, with a simultaneous loss of thermostability. The results led us to hypothesize an important role of the sequence segment present only in hyperthermophilic beta-glycosidases, in the thermal adaptation of archaea beta-glycosidases. The thermostabilization mechanism could occur as a consequence of numerous favorable ionic interactions of the 83-124 sequence with the other part of protein matrix that becomes more rigid and less accessible to the insult of thermal-activated solvent molecules.
对属于糖基水解酶家族1的73种蛋白质进行的多序列比对显示,嗜热古细菌的酶序列中存在一个片段(83 - 124),而该家族的所有嗜温成员中都没有这个片段。嗜热糖苷酶的已知三维结构与嗜温生物的已知三维结构比对表明,除了这个序列片段外,β-糖苷酶的空间组织相似,该片段的结构位于四个相同亚基中每个亚基的外表面,与两个α-螺旋重叠。在嗜热古菌嗜热栖热菌的β-糖苷酶序列中,用半胱氨酸残基取代N97或S101的定点诱变导致了结构和动力学性质的一些变化,这通过远紫外和近紫外光的圆二色性以及频域荧光法观察到,同时热稳定性丧失。这些结果使我们推测,仅存在于嗜热β-糖苷酶中的序列片段在古菌β-糖苷酶的热适应中起重要作用。热稳定机制可能是由于83 - 124序列与蛋白质基质的其他部分发生大量有利的离子相互作用,使得蛋白质基质变得更加刚性,更不易受到热激活溶剂分子的影响。