Suppr超能文献

来自根癌土壤杆菌的一对细菌光敏色素是具有相反光生物学特性的组氨酸激酶。

The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties.

作者信息

Karniol Baruch, Vierstra Richard D

机构信息

Cellular and Molecular Biology Program and Department of Horticulture, University of Wisconsin, 1575 Linden Drive, Madison, WI 53706, USA.

出版信息

Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2807-12. doi: 10.1073/pnas.0437914100. Epub 2003 Feb 25.

Abstract

Bacteriophytochrome photoreceptors (BphPs) are a family of phytochrome-like sensor kinases that help a wide variety of bacteria respond to their light environment. In Agrobacterium tumefaciens, a unique pair of BphPs with potentially opposing roles in light sensing are present. Both AtBphPs contain an N-terminal chromophore-binding domain that covalently attaches a biliverdin chromophore. Whereas AtBphP1 assumes a Pr ground state, AtBphP2 is unusual in that it assumes a Pfr ground state that is produced nonphotochemically after biliverdin binding through a transient Pr-like intermediate. Photoconversion of AtBphP2 with far-red light then generates Pr but this Pr is also unstable and rapidly reverts nonphotochemically to Pfr. AtBphP1 contains a typical two-component histidine kinase domain at its C terminus whose activity is repressed after photoconversion to Pfr. AtBphP2 also functions as a histidine kinase but instead uses a distinct two-component kinase motif that is repressed after photoconversion to Pr. We identified sequences related to this domain in numerous predicted sensing proteins in A. tumefaciens and other bacteria, indicating that AtBphP2 might represent the founding member of a family of histidine phosphorelay proteins that is widely used in environmental signaling. By using these mutually opposing BphPs, A. tumefaciens presumably has the capacity to simultaneously sense red light-rich and far-red light-rich environments through deactivation of their associated kinase cascades.

摘要

细菌光敏色素光感受器(BphPs)是一类类光敏色素传感器激酶家族,可帮助多种细菌对其光照环境做出反应。在根癌土壤杆菌中,存在一对独特的BphPs,它们在光感应中可能具有相反的作用。两种根癌土壤杆菌BphPs(AtBphPs)都含有一个N端发色团结合结构域,该结构域可共价连接一个胆绿素发色团。AtBphP1处于Pr基态,而AtBphP2则不同寻常,它处于Pfr基态,该基态是在胆绿素通过类似Pr的瞬时中间体结合后通过非光化学方式产生的。用远红光对AtBphP2进行光转化会产生Pr,但这种Pr也不稳定,会迅速非光化学地恢复为Pfr。AtBphP1在其C端含有一个典型的双组分组氨酸激酶结构域,其活性在光转化为Pfr后受到抑制。AtBphP2也作为组氨酸激酶发挥作用,但使用的是一个独特的双组分激酶基序,该基序在光转化为Pr后受到抑制。我们在根癌土壤杆菌和其他细菌的许多预测传感蛋白中鉴定出了与该结构域相关的序列,这表明AtBphP2可能代表了广泛用于环境信号传导的组氨酸磷中继蛋白家族的创始成员。通过使用这些相互对立的BphPs,根癌土壤杆菌大概有能力通过失活其相关的激酶级联反应同时感知富含红光和富含远红光的环境。

相似文献

1
The pair of bacteriophytochromes from Agrobacterium tumefaciens are histidine kinases with opposing photobiological properties.
Proc Natl Acad Sci U S A. 2003 Mar 4;100(5):2807-12. doi: 10.1073/pnas.0437914100. Epub 2003 Feb 25.
2
Agrobacterium phytochrome as an enzyme for the production of ZZE bilins.
Biochemistry. 2005 Jun 14;44(23):8461-9. doi: 10.1021/bi047510g.
5
Bacteriophytochromes: new tools for understanding phytochrome signal transduction.
Semin Cell Dev Biol. 2000 Dec;11(6):511-21. doi: 10.1006/scdb.2000.0206.
6
Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore.
Nature. 2001 Dec 13;414(6865):776-9. doi: 10.1038/414776a.
7
Unusual spectral properties of bacteriophytochrome Agp2 result from a deprotonation of the chromophore in the red-absorbing form Pr.
J Biol Chem. 2013 Nov 1;288(44):31738-51. doi: 10.1074/jbc.M113.479535. Epub 2013 Sep 13.
10
Protein conformational changes of Agrobacterium phytochrome Agp1 during chromophore assembly and photoconversion.
Biochemistry. 2007 Apr 3;46(13):4164-76. doi: 10.1021/bi602419x. Epub 2007 Mar 3.

引用本文的文献

1
Traits of Bathy Phytochromes and Application to Bacterial Optogenetics.
ACS Synth Biol. 2025 Aug 15;14(8):3207-3218. doi: 10.1021/acssynbio.5c00337. Epub 2025 Jul 11.
2
Regulation of bacterial phosphorelay systems.
RSC Chem Biol. 2025 Jun 19. doi: 10.1039/d5cb00016e.
3
Analogies and Differences in the Photoactivation Mechanism of Bathy and Canonical Bacteriophytochromes Revealed by Multiscale Modeling.
J Phys Chem Lett. 2024 Aug 8;15(31):8078-8084. doi: 10.1021/acs.jpclett.4c01823. Epub 2024 Aug 1.
5
Vibrational Spectroscopy of Phytochromes.
Biomolecules. 2023 Jun 17;13(6):1007. doi: 10.3390/biom13061007.
6
The structural effect between the output module and chromophore-binding domain is a two-way street via the hairpin extension.
Photochem Photobiol Sci. 2022 Nov;21(11):1881-1894. doi: 10.1007/s43630-022-00265-5. Epub 2022 Aug 19.
7
Vibrational couplings between protein and cofactor in bacterial phytochrome Agp1 revealed by 2D-IR spectroscopy.
Proc Natl Acad Sci U S A. 2022 Aug 2;119(31):e2206400119. doi: 10.1073/pnas.2206400119. Epub 2022 Jul 29.
9
Editorial: Plant Phytochromes: From Structure to Signaling and Beyond.
Front Plant Sci. 2021 Dec 9;12:811379. doi: 10.3389/fpls.2021.811379. eCollection 2021.
10
Structural basis for the Pr-Pfr long-range signaling mechanism of a full-length bacterial phytochrome at the atomic level.
Sci Adv. 2021 Nov 26;7(48):eabh1097. doi: 10.1126/sciadv.abh1097. Epub 2021 Nov 24.

本文引用的文献

1
Phytochrome from Agrobacterium tumefaciens has unusual spectral properties and reveals an N-terminal chromophore attachment site.
Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11628-33. doi: 10.1073/pnas.152263999. Epub 2002 Aug 19.
2
Phytochrome ancestry: sensors of bilins and light.
Trends Plant Sci. 2002 Aug;7(8):357-66. doi: 10.1016/s1360-1385(02)02304-x.
3
Bacteriophytochrome controls photosystem synthesis in anoxygenic bacteria.
Nature. 2002 May 9;417(6885):202-5. doi: 10.1038/417202a.
4
Phytochrome photosensory signalling networks.
Nat Rev Mol Cell Biol. 2002 Feb;3(2):85-93. doi: 10.1038/nrm728.
5
Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58.
Science. 2001 Dec 14;294(5550):2323-8. doi: 10.1126/science.1066803.
6
The genome of the natural genetic engineer Agrobacterium tumefaciens C58.
Science. 2001 Dec 14;294(5550):2317-23. doi: 10.1126/science.1066804.
7
Bacteriophytochromes are photochromic histidine kinases using a biliverdin chromophore.
Nature. 2001 Dec 13;414(6865):776-9. doi: 10.1038/414776a.
8
Histidine kinases and response regulator proteins in two-component signaling systems.
Trends Biochem Sci. 2001 Jun;26(6):369-76. doi: 10.1016/s0968-0004(01)01852-7.
9
Genomic analysis of the histidine kinase family in bacteria and archaea.
Microbiology (Reading). 2001 May;147(Pt 5):1197-1212. doi: 10.1099/00221287-147-5-1197.
10
Phytochromes and light signal perception by plants--an emerging synthesis.
Nature. 2000 Oct 5;407(6804):585-91. doi: 10.1038/35036500.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验