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酪氨酸酶的催化循环:过氧化物进攻酚盐环,随后发生O—O键断裂。

The catalytic cycle of tyrosinase: peroxide attack on the phenolate ring followed by O[bond]O cleavage.

作者信息

Siegbahn Per E M

机构信息

Department of Physics, Stockholm Centre for Physics, Astronomy and Biotechnology (SCFAB), Stockholm University, 106 91 , Stockholm, Sweden.

出版信息

J Biol Inorg Chem. 2003 May;8(5):567-576. doi: 10.1007/s00775-003-0449-4. Epub 2003 Mar 13.

Abstract

The oxidation of phenols to ortho-quinones, catalyzed by tyrosinase, has been studied using the hybrid DFT method B3LYP. Since no X-ray structure exists for tyrosinase, information from the related enzymes hemocyanin and catechol oxidase were used to set up a chemical model for the calculations. Previous studies have indicated that the direct cleavage of O(2) forming a Cu(2)(III,III) state is energetically very unlikely. The present study therefore followed another mechanism previously suggested. In this mechanism, dioxygen attacks the phenolate ring which is then followed by O[bond]O cleavage. The calculations give a reasonable barrier for the O(2) attack of only 12.3 kcal/mol, provided one of the copper ligands is able to move substantially away from its direct copper coordination. This can be achieved with six histidine ligands even if these ligands are held in their positions by the enzyme, but can also be achieved if one of the coppers only has two histidine ligands and the third ligand is water. The next step of O[bond]O cleavage has a computed barrier of 14.4 kcal/mol, in reasonable agreement with the experimental overall rate for the catalytic cycle. For the other steps of the mechanism, only a preliminary investigation was made, indicating a few problems which require future QM/MM studies.

摘要

使用杂化密度泛函理论方法B3LYP研究了酪氨酸酶催化酚类氧化为邻醌的反应。由于不存在酪氨酸酶的X射线结构,因此利用来自相关酶血蓝蛋白和儿茶酚氧化酶的信息建立了用于计算的化学模型。先前的研究表明,O₂直接裂解形成Cu₂(III,III)态在能量上极不可能。因此,本研究采用了先前提出的另一种机制。在这种机制中,双氧攻击酚盐环,随后是O—O裂解。计算得出,只要其中一个铜配体能够大幅远离其与铜的直接配位,O₂攻击的合理能垒仅为12.3 kcal/mol。即使六个组氨酸配体被酶固定在其位置上,也能实现这一点,但如果其中一个铜只有两个组氨酸配体且第三个配体是水,也能实现。O—O裂解的下一步计算能垒为14.4 kcal/mol,与催化循环的实验总速率合理一致。对于该机制的其他步骤,仅进行了初步研究,结果表明存在一些问题,需要未来进行量子力学/分子力学(QM/MM)研究。

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