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酪氨酸酶作用机制的QM 模型与 QM/MM 模型比较。

Comparison of QM-only and QM/MM models for the mechanism of tyrosinase.

机构信息

Department of Physics, Albanova, Department of Biochemistry and Biophysics, Arrhenius Laboratory, Stockholm University, S-106 91 Stockholm, Sweden.

出版信息

Faraday Discuss. 2011;148:109-17; discussion 207-28. doi: 10.1039/c004378h.

Abstract

Two previous studies on the mechanism of tyrosinase have given quite conflicting results. In a QM-only study using a rather small model, a mechanism was suggested in which the tyrosine proton is removed before catalysis. This was followed by catalytic cycles where a superoxo ligand attacks the phenolate ring. In another, more recent study, at the QM/MM level including the entire protein in the model, a quite different mechanism was instead advocated where a bridging O2H ligand was homolytically cleaved. That mechanism was rejected in the earlier QM-only study as having a prohibitively large barrier for O-O bond cleavage. In the present study, this discrepancy between the previous studies is investigated by new QM-only and QM/MM calculations.

摘要

先前关于酪氨酸酶机制的两项研究给出了相当矛盾的结果。在一项仅使用较小模型的 QM 研究中,提出了一种机制,其中在催化之前除去酪氨酸质子。随后是催化循环,其中超氧配体攻击苯并环。在另一项更新的、更近期的研究中,在包括模型中整个蛋白质的 QM/MM 水平上,反而提倡一种不同的机制,其中桥接 O2H 配体发生均裂裂解。该机制在早期的仅 QM 研究中被拒绝,因为 O-O 键裂解的势垒过高。在本研究中,通过新的仅 QM 和 QM/MM 计算研究了先前研究之间的这种差异。

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