Beckstein Oliver, Sansom Mark S P
Department of Biochemistry, University of Oxford, South Parks Road, Oxford OX1 3QU, United Kingdom.
Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7063-8. doi: 10.1073/pnas.1136844100. Epub 2003 May 9.
Water plays a key role in biological membrane transport. In ion channels and water-conducting pores (aquaporins), one-dimensional confinement in conjunction with strong surface effects changes the physical behavior of water. In molecular dynamics simulations of water in short (0.8 nm) hydrophobic pores the water density in the pore fluctuates on a nanosecond time scale. In long simulations (460 ns in total) at pore radii ranging from 0.35 to 1.0 nm we quantify the kinetics of oscillations between a liquid-filled and a vapor-filled pore. This behavior can be explained as capillary evaporation alternating with capillary condensation, driven by pressure fluctuations in the water outside the pore. The free-energy difference between the two states depends linearly on the radius. The free-energy landscape shows how a metastable liquid state gradually develops with increasing radius. For radii > approximately 0.55 nm it becomes the globally stable state and the vapor state vanishes. One-dimensional confinement affects the dynamic behavior of the water molecules and increases the self diffusion by a factor of 2-3 compared with bulk water. Permeabilities for the narrow pores are of the same order of magnitude as for biological water pores. Water flow is not continuous but occurs in bursts. Our results suggest that simulations aimed at collective phenomena such as hydrophobic effects may require simulation times >50 ns. For water in confined geometries, it is not possible to extrapolate from bulk or short time behavior to longer time scales.
水在生物膜运输中起着关键作用。在离子通道和水传导孔(水通道蛋白)中,一维受限与强烈的表面效应共同改变了水的物理行为。在短(0.8纳米)疏水孔中水分子的分子动力学模拟中,孔内的水密度在纳秒时间尺度上波动。在总时长为460纳秒、孔径范围从0.35到1.0纳米的长时间模拟中,我们量化了充满液体的孔和充满蒸汽的孔之间振荡的动力学。这种行为可以解释为毛细蒸发与毛细凝结交替出现,由孔外水的压力波动驱动。两种状态之间的自由能差线性依赖于半径。自由能景观展示了亚稳态液体状态如何随着半径增加而逐渐形成。对于半径大于约0.55纳米的情况,它成为全局稳定状态,蒸汽状态消失。一维受限影响水分子的动态行为,与体相水相比,自扩散增加了2至3倍。窄孔的渗透率与生物水孔的渗透率处于同一数量级。水流不是连续的,而是以突发形式发生。我们的结果表明,针对诸如疏水效应等集体现象的模拟可能需要超过50纳秒的模拟时间。对于处于受限几何形状中的水,不可能从体相或短时间行为外推到更长的时间尺度。