Contribution of structural genomics to understanding the biology of Escherichia coli.
作者信息
Matte Allan, Sivaraman J, Ekiel Irena, Gehring Kalle, Jia Zongchao, Cygler Miroslaw
机构信息
Biotechnology Research Institute, Concordia University Montréal, Québec, Canada.
出版信息
J Bacteriol. 2003 Jul;185(14):3994-4002. doi: 10.1128/JB.185.14.3994-4002.2003.
Abstract
摘要
相似文献
1
Contribution of structural genomics to understanding the biology of Escherichia coli.结构基因组学对理解大肠杆菌生物学的贡献。
J Bacteriol. 2003 Jul;185(14):3994-4002. doi: 10.1128/JB.185.14.3994-4002.2003.
2
Crystal structure of the Escherichia coli YjiA protein suggests a GTP-dependent regulatory function.大肠杆菌YjiA蛋白的晶体结构表明其具有GTP依赖性调节功能。
Proteins. 2004 Feb 1;54(2):371-4. doi: 10.1002/prot.10430.
3
Structural biology. The atomic architecture of a gas channel.结构生物学。气体通道的原子结构。
Science. 2004 Sep 10;305(5690):1573-4. doi: 10.1126/science.1103191.
4
X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation.大肠杆菌HspQ的X射线晶体结构，一种参与延缓复制起始的蛋白质。
FEBS Lett. 2017 Nov;591(22):3805-3816. doi: 10.1002/1873-3468.12892. Epub 2017 Nov 12.
5
Computational and experimental approaches to chart the Escherichia coli cell-envelope-associated proteome and interactome.绘制大肠杆菌细胞包膜相关蛋白质组和相互作用组的计算与实验方法。
FEMS Microbiol Rev. 2009 Jan;33(1):66-97. doi: 10.1111/j.1574-6976.2008.00141.x. Epub 2008 Nov 27.
6
Discovery of Nicotinamide Adenine Dinucleotide Binding Proteins in the Escherichia coli Proteome Using a Combined Energetic- and Structural-Bioinformatics-Based Approach.使用基于能量和结构生物信息学的联合方法在大肠杆菌蛋白质组中发现烟酰胺腺嘌呤二核苷酸结合蛋白
J Proteome Res. 2017 Feb 3;16(2):470-480. doi: 10.1021/acs.jproteome.6b00624. Epub 2016 Dec 5.
7
Consequences of localized frustration for the folding mechanism of the IM7 protein.IM7蛋白折叠机制中局部受挫的后果。
Proc Natl Acad Sci U S A. 2007 Dec 11;104(50):19825-30. doi: 10.1073/pnas.0709922104. Epub 2007 Dec 5.
8
Structural insight into the formation of lipoprotein-β-barrel complexes.脂蛋白-β-桶状复合物形成的结构见解。
Nat Chem Biol. 2020 Sep;16(9):1019-1025. doi: 10.1038/s41589-020-0575-0. Epub 2020 Jun 22.
9
From the genome sequence to the proteome and back: evaluation of E. coli genome annotation with a 2-D gel-based proteomics approach.从基因组序列到蛋白质组再回归：基于二维凝胶蛋白质组学方法对大肠杆菌基因组注释的评估
Proteomics. 2007 Apr;7(7):1097-106. doi: 10.1002/pmic.200600599.
10
Structural biology. Breaching the barrier.结构生物学。突破障碍。
Science. 2003 Aug 1;301(5633):603-4. doi: 10.1126/science.1088621.
引用本文的文献
1
From protein sequences to 3D-structures and beyond: the example of the UniProt knowledgebase.从蛋白质序列到 3D 结构，甚至更远：以 UniProt 知识库为例。
Cell Mol Life Sci. 2010 Apr;67(7):1049-64. doi: 10.1007/s00018-009-0229-6. Epub 2009 Dec 31.
2
Targeting the human cancer pathway protein interaction network by structural genomics.通过结构基因组学靶向人类癌症通路蛋白相互作用网络。
Mol Cell Proteomics. 2008 Oct;7(10):2048-60. doi: 10.1074/mcp.M700550-MCP200. Epub 2008 May 18.
本文引用的文献
1
Raster3D: photorealistic molecular graphics.Raster3D：逼真的分子图形。
Methods Enzymol. 1997;277:505-24. doi: 10.1016/s0076-6879(97)77028-9.
2
The solution structure of YbcJ from Escherichia coli reveals a recently discovered alphaL motif involved in RNA binding.来自大肠杆菌的YbcJ的溶液结构揭示了一个最近发现的参与RNA结合的αL基序。
J Bacteriol. 2003 Jul;185(14):4204-10. doi: 10.1128/JB.185.14.4204-4210.2003.
3
Structures of shikimate dehydrogenase AroE and its Paralog YdiB. A common structural framework for different activities.莽草酸脱氢酶AroE及其旁系同源物YdiB的结构。不同活性的共同结构框架。
J Biol Chem. 2003 May 23;278(21):19463-72. doi: 10.1074/jbc.M300794200. Epub 2003 Mar 12.
4
Crystal structure of a trimeric form of dephosphocoenzyme A kinase from Escherichia coli.来自大肠杆菌的去磷酸辅酶A激酶三聚体形式的晶体结构。
Protein Sci. 2003 Feb;12(2):327-36. doi: 10.1110/ps.0227803.
5
Enlarged FAMSBASE: protein 3D structure models of genome sequences for 41 species.扩展的FAMSBASE：41种物种基因组序列的蛋白质三维结构模型
Nucleic Acids Res. 2003 Jan 1;31(1):463-8. doi: 10.1093/nar/gkg117.
6
Structure of Escherichia coli ribose-5-phosphate isomerase: a ubiquitous enzyme of the pentose phosphate pathway and the Calvin cycle.大肠杆菌核糖-5-磷酸异构酶的结构：戊糖磷酸途径和卡尔文循环中的一种普遍存在的酶。
Structure. 2003 Jan;11(1):31-42. doi: 10.1016/s0969-2126(02)00933-4.
7
Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.尿路致病性大肠杆菌全基因组序列揭示的广泛镶嵌结构
Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):17020-4. doi: 10.1073/pnas.252529799. Epub 2002 Dec 5.
8
The structure of the protein universe and genome evolution.蛋白质宇宙的结构与基因组进化。
Nature. 2002 Nov 14;420(6912):218-23. doi: 10.1038/nature01256.
9
Prediction, assessment and validation of protein interaction maps in bacteria.细菌中蛋白质相互作用图谱的预测、评估与验证。
J Mol Biol. 2002 Nov 1;323(4):763-70. doi: 10.1016/s0022-2836(02)01009-4.
10
Structure of imidazole glycerol phosphate synthase from Thermus thermophilus HB8: open-closed conformational change and ammonia tunneling.嗜热栖热菌HB8来源的咪唑甘油磷酸合酶的结构：开闭构象变化与氨隧穿
J Biochem. 2002 Nov;132(5):759-65. doi: 10.1093/oxfordjournals.jbchem.a003284.
Zotero 插件