Russo Andrew T, Rösgen Jörg, Bolen D W
Department of Human Biological Chemistry and Genetics, University of Texas Medical Branch, 5.154 MRB, Galveston, TX 77555-1052, USA.
J Mol Biol. 2003 Jul 18;330(4):851-66. doi: 10.1016/s0022-2836(03)00626-0.
Unfolding and refolding kinetics of human FKBP12 C22A were monitored by fluorescence emission over a wide range of urea concentration in the presence and absence of protecting osmolytes glycerol, proline, sarcosine and trimethylamine-N-oxide (TMAO). Unfolding is well described by a mono-exponential process, while refolding required a minimum of two exponentials for an adequate fit throughout the urea concentration range considered. The bi-exponential behavior resulted from complex coupling between protein folding, and prolyl isomerization in the denatured state in which the urea-dependent rate constant for folding was greater than, equal to, and less than the rate constants for prolyl isomerization within the urea concentration range of zero to five molar. Amplitudes and the observed folding and unfolding rate constants were fitted to a reversible three-state model composed of two sequential steps involving the native state and a folding-competent denatured species thermodynamically linked to a folding-incompetent denatured species. Excellent agreement between thermodynamic parameters for FKBP12 C22A folding calculated from the kinetic parameters and those obtained directly from equilibrium denaturation assays provides strong support for the applicability of the mechanism, and provides evidence that FKBP12 C22A folding/unfolding is two-state, with prolyl isomer heterogeneity in the denatured ensemble. Despite the chemical diversity of the protecting osmolytes, they all exhibit the same kinetic behavior of increasing the rate constant of folding and decreasing the rate constant for unfolding. Osmolyte effects on folding/unfolding kinetics are readily explained in terms of principles established in understanding osmolyte effects on protein stability. These principles involve the osmophobic effect, which raises the Gibbs energy of the denatured state due to exposure of peptide backbone, thereby increasing the folding rate. This effect also plays a key role in decreasing the unfolding rate when, as is often the case, the activated complex exposes more backbone than is exposed in the native state.
在存在和不存在保护性渗透剂甘油、脯氨酸、肌氨酸和三甲胺 - N - 氧化物(TMAO)的情况下,通过荧光发射监测人FKBP12 C22A在广泛尿素浓度范围内的展开和重折叠动力学。展开过程可用单指数过程很好地描述,而重折叠在整个考虑的尿素浓度范围内至少需要两个指数才能得到充分拟合。双指数行为源于蛋白质折叠与变性状态下脯氨酰异构化之间的复杂耦合,在零至五摩尔的尿素浓度范围内,尿素依赖性折叠速率常数大于、等于和小于脯氨酰异构化速率常数。将振幅以及观察到的折叠和展开速率常数拟合到一个可逆三态模型,该模型由两个涉及天然态和与无折叠能力的变性物种热力学相关的有折叠能力的变性物种的连续步骤组成。从动力学参数计算得到的FKBP12 C22A折叠的热力学参数与直接从平衡变性测定获得的参数之间的出色一致性,为该机制的适用性提供了有力支持,并证明FKBP12 C22A的折叠/展开是两态的,在变性集合中存在脯氨酰异构化异质性。尽管保护性渗透剂的化学性质多样,但它们都表现出相同的动力学行为,即增加折叠速率常数并降低展开速率常数。渗透剂对折叠/展开动力学的影响可以根据理解渗透剂对蛋白质稳定性影响所确立的原理很容易地解释。这些原理涉及疏溶剂效应,由于肽主链的暴露,疏溶剂效应提高了变性状态的吉布斯自由能,从而增加了折叠速率。当活化复合物通常比天然状态暴露更多主链时,这种效应在降低展开速率方面也起着关键作用。