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简单模型肽在水相渗透物溶液中的水合作用。

Hydration of Simple Model Peptides in Aqueous Osmolyte Solutions.

机构信息

Department of Physical Chemistry, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland.

Department of Organic Chemistry, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland.

出版信息

Int J Mol Sci. 2021 Aug 28;22(17):9350. doi: 10.3390/ijms22179350.

Abstract

The biology and chemistry of proteins and peptides are inextricably linked with water as the solvent. The reason for the high stability of some proteins or uncontrolled aggregation of others may be hidden in the properties of their hydration water. In this study, we investigated the effect of stabilizing osmolyte-TMAO (trimethylamine -oxide) and destabilizing osmolyte-urea on hydration shells of two short peptides, NAGMA (-acetyl-glycine-methylamide) and diglycine, by means of FTIR spectroscopy and molecular dynamics simulations. We isolated the spectroscopic share of water molecules that are simultaneously under the influence of peptide and osmolyte and determined the structural and energetic properties of these water molecules. Our experimental and computational results revealed that the changes in the structure of water around peptides, caused by the presence of stabilizing or destabilizing osmolyte, are significantly different for both NAGMA and diglycine. The main factor determining the influence of osmolytes on peptides is the structural-energetic similarity of their hydration spheres. We showed that the chosen peptides can serve as models for various fragments of the protein surface: NAGMA for the protein backbone and diglycine for the protein surface with polar side chains.

摘要

蛋白质和肽的生物学和化学与水作为溶剂密不可分。一些蛋白质高度稳定的原因,或者其他蛋白质不受控制聚集的原因,可能隐藏在其水合水的性质中。在这项研究中,我们通过傅里叶变换红外光谱和分子动力学模拟研究了稳定化渗透剂-TMAO(三甲基氧化胺)和非稳定化渗透剂-尿素对两种短肽 NAGMA(-乙酰-甘氨酸-甲基酰胺)和二肽的水合壳的影响。我们分离了同时受到肽和渗透剂影响的水分子的光谱份额,并确定了这些水分子的结构和能量性质。我们的实验和计算结果表明,对于 NAGMA 和二肽,稳定化或非稳定化渗透剂存在时,肽周围水分子结构的变化显著不同。决定渗透剂对肽影响的主要因素是其水合球的结构-能量相似性。我们表明,所选的肽可以作为蛋白质表面各种片段的模型:NAGMA 代表蛋白质主链,二肽代表带有极性侧链的蛋白质表面。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bc78/8431001/e2b8c10ede27/ijms-22-09350-g001.jpg

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