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渗透溶质在芽孢杆菌RNA酶抑制剂折叠途径的早期中间体中诱导结构形成。

Osmolytes induce structure in an early intermediate on the folding pathway of barstar.

作者信息

Pradeep Lovy, Udgaonkar Jayant B

机构信息

National Centre for Biological Sciences, Tata Institute of Fundamental Research, Gandhi Krishi Vigyan Kendra Campus, Bangalore 560 065, India.

出版信息

J Biol Chem. 2004 Sep 24;279(39):40303-13. doi: 10.1074/jbc.M406323200. Epub 2004 Jul 17.

Abstract

Osmolytes stabilize proteins against denaturation, but little is known about how their stabilizing effect might affect a protein folding pathway. Here, we report the effects of the osmolytes, trimethylamine-N-oxide, and sarcosine on the stability of the native state of barstar as well as on the structural heterogeneity of an early intermediate ensemble, IE, on its folding pathway. Both osmolytes increase the stability of the native protein to a similar extent, with stability increasing linearly with osmolyte concentration. Both osmolytes also increase the stability of IE but to different extents. Such stabilization leads to an acceleration in the folding rate. Both osmolytes also alter the structure of IE but do so differentially; the fluorescence and circular dichroism properties of IE differ in the presence of the different osmolytes. Because these properties also differ from those of the unfolded form in refolding conditions, different burst phase changes in the optical signals are seen for folding in the presence of the different osmolytes. An analysis of the urea dependence of the burst phase changes in fluorescence and circular dichroism demonstrates that the formation of IE is itself a multistep process during folding and that the two osmolytes act by stabilizing, differentially, different structural components present in the IE ensemble. Thus, osmolytes can alter the basic nature of a protein folding pathway by discriminating, through differential stabilization, between different members of an early intermediate ensemble, and in doing so, they thereby appear to channel folding along one route when many routes are available.

摘要

渗透溶质可稳定蛋白质,防止其变性,但对于它们的稳定作用如何影响蛋白质折叠途径却知之甚少。在此,我们报告了渗透溶质三甲胺 - N - 氧化物和肌氨酸对巴司星天然态稳定性以及对其折叠途径中早期中间体集合(IE)结构异质性的影响。两种渗透溶质都能在相似程度上提高天然蛋白质的稳定性,稳定性随渗透溶质浓度呈线性增加。两种渗透溶质也都能提高IE的稳定性,但程度不同。这种稳定作用导致折叠速率加快。两种渗透溶质还会改变IE的结构,但方式不同;在不同渗透溶质存在的情况下,IE的荧光和圆二色性特性有所不同。由于这些特性在复性条件下也与未折叠形式的特性不同,因此在不同渗透溶质存在的情况下进行折叠时,会观察到光信号的不同爆发相变化。对荧光和圆二色性爆发相变化的尿素依赖性分析表明,IE的形成本身在折叠过程中是一个多步骤过程,并且这两种渗透溶质通过差异稳定IE集合中存在的不同结构成分来发挥作用。因此,渗透溶质可以通过在早期中间体集合的不同成员之间进行差异稳定化区分,从而改变蛋白质折叠途径的基本性质,并且这样做时,当有许多途径可用时,它们似乎会引导折叠沿着一条途径进行。

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