Iannuzzi Marcella, Laio Alessandro, Parrinello Michele
CSCS (Centro Svizzero di Calcolo Scientifico), via Cantonale, CH-6928 Manno and Physical Chemistry ETH, Hönggerberg HCI, CH-8093 Zurich, Switzerland.
Phys Rev Lett. 2003 Jun 13;90(23):238302. doi: 10.1103/PhysRevLett.90.238302. Epub 2003 Jun 9.
The possibility of observing chemical reactions in ab initio molecular dynamics runs is severely hindered by the short simulation time accessible. We propose a new method for accelerating the reaction process, based on the ideas of the extended Lagrangian and coarse-grained non-Markovian metadynamics. We demonstrate that by this method it is possible to simulate reactions involving complex atomic rearrangements and very large energy barriers in runs of a few picoseconds.
从头算分子动力学模拟中观察化学反应的可能性受到可及的短模拟时间的严重阻碍。我们基于扩展拉格朗日和粗粒化非马尔可夫元动力学的思想,提出了一种加速反应过程的新方法。我们证明,通过这种方法,可以在几皮秒的模拟中模拟涉及复杂原子重排和非常大能量势垒的反应。