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限制性内切酶SfiI与DNA复合物的结晶。

Crystallization of restriction endonuclease SfiI in complex with DNA.

作者信息

Viadiu Hector, Vanamee Eva Scheuring, Jacobson Eric M, Schildkraut Ira, Aggarwal Aneel K

机构信息

Department of Physiology and Biophysics, Mount Sinai School of Medicine, New York, NY 10029, USA.

出版信息

Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1493-5. doi: 10.1107/s0907444903011910. Epub 2003 Jul 23.

DOI:10.1107/s0907444903011910
PMID:12876363
Abstract

The SfiI endonuclease from Streptomyces fimbriatus (EC 3.1.21.4) is a tetrameric enzyme that binds simultaneously to two recognition sites and cleaves both sites concertedly. It serves as a good model system for studying both specificity and cooperative DNA binding. Crystals of the enzyme were obtained by the hanging-drop vapor-diffusion method in complex with a 21-mer oligonucleotide. The crystals are trigonal, with unit-cell parameters a = b = 85.7, c = 202.6 A, and diffract to 2.6 A resolution on a rotating-anode X-ray generator. Preliminary X-ray analysis reveals the space group to be either P3(1)21 or P3(2)21. Interestingly, the crystals change to space group P6(1)22, with unit-cell parameters a = b = 85.5, c = 419.6 A, when the selenomethionyl (SeMet) derivative of the enzyme is co-crystallized with the same DNA. Phase information is currently being derived from this SeMet SfiI-DNA complex.

摘要

来自链霉菌(Streptomyces fimbriatus)的SfiI核酸内切酶(EC 3.1.21.4)是一种四聚体酶,它能同时结合两个识别位点并协同切割这两个位点。它是研究特异性和协同DNA结合的良好模型系统。通过悬滴气相扩散法获得了该酶与21聚体寡核苷酸复合物的晶体。晶体为三方晶系,晶胞参数a = b = 85.7,c = 202.6 Å,在旋转阳极X射线发生器上可衍射至2.6 Å分辨率。初步X射线分析表明空间群为P3(1)21或P3(2)21。有趣的是,当该酶的硒代甲硫氨酸(SeMet)衍生物与相同的DNA共结晶时,晶体转变为空间群P6(1)22,晶胞参数a = b = 85.5,c = 419.6 Å。目前正在从这种SeMet SfiI-DNA复合物中获取相位信息。

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引用本文的文献

1
A view of consecutive binding events from structures of tetrameric endonuclease SfiI bound to DNA.结合DNA的四聚体内切酶SfiI结构所呈现的连续结合事件。
EMBO J. 2005 Dec 7;24(23):4198-208. doi: 10.1038/sj.emboj.7600880. Epub 2005 Nov 24.