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ESTWeb:为EST测序项目提供的生物信息学服务。

ESTWeb: bioinformatics services for EST sequencing projects.

作者信息

Paquola Apuã C M, Nishyiama Milton Y, Reis Eduardo M, da Silva Aline M, Verjovski-Almeida Sergio

机构信息

Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, 05508-900, São Paulo, SP, Brazil.

出版信息

Bioinformatics. 2003 Aug 12;19(12):1587-8. doi: 10.1093/bioinformatics/btg196.

Abstract

ESTWeb is an internet based software package designed for uniform data processing and storage for large-scale EST sequencing projects. The package provides for: (a) reception of sequencing chromatograms; (b) sequence processing such as base-calling, vector screening, comparison with public databases; (c) storage of data and analysis in a relational database, (d) generation of a graphical report of individual sequence quality; and (e) issuing of reports with statistics of productivity and redundancy. The software facilitates real-time monitoring and evaluation of EST sequence acquisition progress along an EST sequencing project.

摘要

ESTWeb是一个基于互联网的软件包,专为大规模EST测序项目的统一数据处理和存储而设计。该软件包具备以下功能:(a) 接收测序色谱图;(b) 序列处理,如碱基识别、载体筛选、与公共数据库比对;(c) 在关系数据库中存储数据并进行分析;(d) 生成单个序列质量的图形报告;以及 (e) 发布包含生产力和冗余统计信息的报告。该软件有助于在EST测序项目中实时监测和评估EST序列获取进度。

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