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通过定位克隆寻找炎症性肠病易感基因的研究进展

Progress in searching for susceptibility gene for inflammatory bowel disease by positional cloning.

作者信息

Zheng Chang-Qing, Hu Gang-Zheng, Zeng Zhao-Shu, Lin Lian-Jie, Gu Gin-Ge

机构信息

Department of Gastroenterology, the Second Affiliated Clinical College of China Medical University, Shenyang 110001, Liaoning Province, China.

出版信息

World J Gastroenterol. 2003 Aug;9(8):1646-56. doi: 10.3748/wjg.v9.i8.1646.

DOI:10.3748/wjg.v9.i8.1646
PMID:12918095
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4611518/
Abstract

Inflammatory bowel disease (IBD) includes two clinical subtypes: Crohn disease (CD) and ulcerative colitis (UC). The general prevalence is about 1.0-2.0 % in Western countries. It is predominantly regarded as a multifactorial disorder involving environmental factors and polygenic defects. The view was confirmed by a lot of evidences from clinical attributions and animal models, especially from epidemiological investigations. So the etiological study of IBD has been focused on searching for susceptibility genes by positional cloning, which consists of two steps: linkage analysis and association analysis. Linkage analysis has been an important method of searching for susceptibility genes to polygenic diseases as well as single-gene disorders. IBD, as a polygenic disease, has been widely investigated by linkage analysis for susceptibility gene since 1996. The paper reviewed 38 articles, which covered almost all original researches in relation to IBD and linkage analysis. So far, several loci, such as 16q, 12q, 6p and 3p, have been identified by the studies. The most striking is 16q12 (IBD1), which linked only with CD not UC in the majority of studies. Association analysis, as one essential step for positional cloning, is usually carried out by genotyping candidate genes selected by means of linkage analysis or other methods, for figuring out the frequencies of alleles and comparing the frequencies between IBD group and healthy control group to identify the specific allele. It has been established that IBD is implicated in immune disorder. So the studies were centered on the genes of NOD2/CARD15, HLA-II, cytokine, cytokine receptor and adhesion molecule. This paper reviewed 14 original articles on association between NOD2 and IBD that have been published since 2001. All results, with the exception of one report from a Japanese group, provide evidences that the three kinds of variants of NOD2 are susceptibility factors for IBD. This article also comprehensively analyzed 18 original researches of HLA gene polymorphism in IBD. We found extensive discrepancy among the conclusions and a novel hypothesis was put forward to explain the discordance. Most studies published recently on association between IBD and cytokine gene polymorphism were reviewed.

摘要

炎症性肠病(IBD)包括两种临床亚型:克罗恩病(CD)和溃疡性结肠炎(UC)。在西方国家,其总体患病率约为1.0%-2.0%。它主要被视为一种涉及环境因素和多基因缺陷的多因素疾病。这一观点已被来自临床归因、动物模型尤其是流行病学调查的大量证据所证实。因此,IBD的病因学研究一直聚焦于通过定位克隆寻找易感基因,这包括两个步骤:连锁分析和关联分析。连锁分析一直是寻找多基因疾病以及单基因疾病易感基因的重要方法。IBD作为一种多基因疾病,自1996年以来已通过连锁分析对其易感基因进行了广泛研究。本文回顾了38篇文章,这些文章几乎涵盖了所有与IBD和连锁分析相关的原始研究。到目前为止,通过这些研究已确定了几个基因座,如16q、12q、6p和3p。最引人注目的是16q12(IBD1),在大多数研究中它仅与CD相关,而与UC无关。关联分析作为定位克隆的一个关键步骤,通常通过对通过连锁分析或其他方法选择的候选基因进行基因分型来进行,以确定等位基因频率,并比较IBD组和健康对照组之间的频率,从而识别特定的等位基因。已经确定IBD与免疫紊乱有关。因此,研究集中在NOD2/CARD15、HLA-II、细胞因子、细胞因子受体和黏附分子等基因上。本文回顾了自2001年以来发表的14篇关于NOD2与IBD关联的原始文章。除了一个日本研究小组的一份报告外,所有结果都提供了证据表明NOD2的三种变体是IBD的易感因素。本文还全面分析了18项关于IBD中HLA基因多态性的原始研究。我们发现结论之间存在广泛差异,并提出了一个新的假说来解释这种不一致。本文还回顾了最近发表的大多数关于IBD与细胞因子基因多态性关联的研究。

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World J Gastroenterol. 2003 Aug;9(8):1646-56. doi: 10.3748/wjg.v9.i8.1646.
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Interaction between STAT3 gene polymorphisms and smoking on Crohn's disease susceptibility: a case-control study in a Chinese Han population.STAT3基因多态性与吸烟对克罗恩病易感性的相互作用:一项中国汉族人群的病例对照研究
Inflamm Res. 2016 Jul;65(7):573-8. doi: 10.1007/s00011-016-0941-2. Epub 2016 Mar 29.
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Diagn Pathol. 2014 May 29;9:104. doi: 10.1186/1746-1596-9-104.
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RAGE gene three polymorphisms with Crohn's disease susceptibility in Chinese Han population.中国汉族人群中RAGE基因的三种多态性与克罗恩病易感性的关系
World J Gastroenterol. 2014 Mar 7;20(9):2397-402. doi: 10.3748/wjg.v20.i9.2397.
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Clinical effects of adalimumab treatment with concomitant azathioprine in Japanese Crohn's disease patients.阿达木单抗联合硫唑嘌呤治疗日本克罗恩病患者的临床疗效。
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本文引用的文献

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Genetics of inflammatory bowel disease.炎症性肠病的遗传学
Isr Med Assoc J. 2002 Oct;4(10):798-802.
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Evidence for an inflammatory bowel disease locus on chromosome 3p26: linkage, transmission/disequilibrium and partitioning of linkage.3号染色体短臂26区存在炎性肠病基因座的证据:连锁分析、传递/不平衡及连锁划分
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Fine mapping of the IBD1 locus did not identify Crohn disease-associated NOD2 variants: implications for complex disease genetics.炎症性肠病1(IBD1)基因座的精细定位未发现与克罗恩病相关的NOD2变异:对复杂疾病遗传学的启示。
Am J Med Genet. 2002 Aug 15;111(3):253-9. doi: 10.1002/ajmg.10588.
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Mutations in NOD2 are associated with fibrostenosing disease in patients with Crohn's disease.NOD2基因的突变与克罗恩病患者的纤维狭窄性疾病相关。
Gastroenterology. 2002 Sep;123(3):679-88. doi: 10.1053/gast.2002.35393.
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[Interleukin (IL)-1beta, IL-1 receptor antagonist and IL-4 gene polymorphisms in ulcerative colitis in the Chinese].[白细胞介素(IL)-1β、IL-1受体拮抗剂及IL-4基因多态性与中国溃疡性结肠炎的关系]
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NOD2/CARD15 does not influence response to infliximab in Crohn's disease.NOD2/CARD15不影响克罗恩病患者对英夫利昔单抗的反应。
Gastroenterology. 2002 Jul;123(1):106-11. doi: 10.1053/gast.2002.34172.
8
Lack of common NOD2 variants in Japanese patients with Crohn's disease.日本克罗恩病患者中缺乏常见的NOD2变异体。
Gastroenterology. 2002 Jul;123(1):86-91. doi: 10.1053/gast.2002.34155.
9
Investigation of HLA-DPA1 genotypes as predictors of inflammatory bowel disease in the German, South African, and South Korean populations.
Int J Colorectal Dis. 2002 Jul;17(4):238-44. doi: 10.1007/s00384-001-0382-3. Epub 2001 Dec 21.
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The c-insertion mutation of the NOD2 gene is associated with fistulizing and fibrostenotic phenotypes in Crohn's disease.NOD2基因的c插入突变与克罗恩病的瘘管形成和纤维狭窄表型相关。
Gastroenterology. 2002 Jun;122(7):2091-2. doi: 10.1053/gast.2002.34020.