• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

视觉转导中第二信使时空动力学的数学模型

Mathematical model of the spatio-temporal dynamics of second messengers in visual transduction.

作者信息

Andreucci D, Bisegna P, Caruso G, Hamm H E, DiBenedetto E

机构信息

Dipartimento di Metodi e Modelli Matematici, Università di Roma La Sapienza, 00161 Rome, Italy.

出版信息

Biophys J. 2003 Sep;85(3):1358-76. doi: 10.1016/S0006-3495(03)74570-6.

DOI:10.1016/S0006-3495(03)74570-6
PMID:12944255
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC1303314/
Abstract

A model describing the role of transversal and longitudinal diffusion of cGMP and Ca(2+) in signaling in the rod outer segment of vertebrates is developed. Utilizing a novel notion of surface-volume reaction and the mathematical theories of homogenization and concentrated capacity, the diffusion of cGMP and Ca(2+) in the inter-disc spaces is shown to be reducible to a one-parameter family of diffusion processes taking place on a single rod cross section; whereas the diffusion in the outer shell is shown to be reducible to a diffusion on a cylindrical surface. Moreover, the exterior flux of the former serves as a source term for the latter, alleviating the assumption of a well-stirred cytosol. A previous model of visual transduction that assumes a well-stirred rod outer segment cytosol (and thus contains no spatial information) can be recovered from this model by imposing a "bulk" assumption. The model shows that upon activation of a single rhodopsin, cGMP changes are local, and exhibit both a longitudinal and a transversal component. Consequently, membrane current is also highly localized. The spatial spread of the single photon response along the longitudinal axis of the outer segment is predicted to be 3-5 microm, consistent with experimental data. This approach represents a tool to analyze point-wise signaling dynamics without requiring averaging over the entire cell by global Michaelis-Menten kinetics.

摘要

建立了一个描述环磷酸鸟苷(cGMP)和钙离子(Ca(2+))的横向和纵向扩散在脊椎动物视杆外段信号传导中作用的模型。利用表面-体积反应的新概念以及均匀化和集中容量的数学理论,证明了cGMP和Ca(2+)在盘间空间中的扩散可简化为在单个视杆横截面上发生的单参数扩散过程族;而外壳中的扩散可简化为圆柱面上的扩散。此外,前者的外部通量作为后者的源项,减轻了对充分搅拌的胞质溶胶的假设。通过施加“总体”假设,可以从该模型中恢复先前假设视杆外段胞质溶胶充分搅拌(因此不包含空间信息)的视觉转导模型。该模型表明,在单个视紫红质激活后,cGMP变化是局部的,并且呈现纵向和横向分量。因此,膜电流也高度局部化。预测单个光子响应沿外段纵轴的空间传播为3-5微米,与实验数据一致。这种方法代表了一种分析逐点信号动力学的工具,无需通过全局米氏动力学对整个细胞进行平均。

相似文献

1
Mathematical model of the spatio-temporal dynamics of second messengers in visual transduction.视觉转导中第二信使时空动力学的数学模型
Biophys J. 2003 Sep;85(3):1358-76. doi: 10.1016/S0006-3495(03)74570-6.
2
Modeling the role of incisures in vertebrate phototransduction.模拟切迹在脊椎动物光转导中的作用。
Biophys J. 2006 Aug 15;91(4):1192-212. doi: 10.1529/biophysj.106.083618. Epub 2006 May 19.
3
Mathematical and computational modelling of spatio-temporal signalling in rod phototransduction.视杆细胞光转导中时空信号传导的数学与计算建模
Syst Biol (Stevenage). 2005 Sep;152(3):119-37. doi: 10.1049/ip-syb:20050019.
4
Longitudinal diffusion of a polar tracer in the outer segments of rod photoreceptors from different species.极性示踪剂在不同物种视杆光感受器外段中的纵向扩散。
Photochem Photobiol. 2006 Nov-Dec;82(6):1447-51. doi: 10.1562/2006-02-22-RA-807.
5
Longitudinal diffusion in retinal rod and cone outer segment cytoplasm: the consequence of cell structure.视网膜视杆和视锥细胞外段细胞质中的纵向扩散:细胞结构的结果
Biophys J. 2004 Apr;86(4):2566-82. doi: 10.1016/S0006-3495(04)74312-X.
6
Dynamics of mouse rod phototransduction and its sensitivity to variation of key parameters.鼠标棒状光感受器的动态及其对关键参数变化的敏感性。
IET Syst Biol. 2010 Jan;4(1):12-32. doi: 10.1049/iet-syb.2008.0154.
7
Local, nonlinear effects of cGMP and Ca2+ reduce single photon response variability in retinal rods.cGMP 和 Ca2+ 的局部非线性效应降低了视网膜杆状细胞的单光子反应变异性。
PLoS One. 2019 Dec 5;14(12):e0225948. doi: 10.1371/journal.pone.0225948. eCollection 2019.
8
Spatial spread of activation and background desensitization in toad rod outer segments.蟾蜍视杆细胞外段激活的空间扩散及背景脱敏
J Physiol. 1981;319:463-96. doi: 10.1113/jphysiol.1981.sp013921.
9
Estimating the rate constant of cyclic GMP hydrolysis by activated phosphodiesterase in photoreceptors.估算光感受器中活化磷酸二酯酶催化的环磷酸鸟苷水解的速率常数。
J Chem Phys. 2008 Oct 14;129(14):145102. doi: 10.1063/1.2991174.
10
Phototransduction in vertebrate rods.脊椎动物视杆细胞中的光转导。
Annu Rev Neurosci. 1985;8:339-67. doi: 10.1146/annurev.ne.08.030185.002011.

引用本文的文献

1
The effects of bicarbonate on the aberrant photon response in murine rod photoreceptors.碳酸氢盐对小鼠视杆光感受器异常光子反应的影响。
Biophys J. 2025 Jun 27. doi: 10.1016/j.bpj.2025.06.035.
2
Assembling the jigsaw puzzle of life.拼凑生命的拼图。
Trends Biochem Sci. 2025 May;50(5):374-375. doi: 10.1016/j.tibs.2025.02.003. Epub 2025 Mar 17.
3
A force-sensitive adhesion GPCR is required for equilibrioception.平衡觉需要一种力敏性粘附G蛋白偶联受体。
Cell Res. 2025 Apr;35(4):243-264. doi: 10.1038/s41422-025-01075-x. Epub 2025 Feb 18.
4
Pepperberg plot: Modeling flash response saturation in retinal rods of mouse.佩珀伯格图:模拟小鼠视网膜视杆细胞中的闪光反应饱和度。
Front Mol Neurosci. 2023 Jan 13;15:1054449. doi: 10.3389/fnmol.2022.1054449. eCollection 2022.
5
Phototransduction in retinal cones: Analysis of parameter importance.视网膜锥体中的光转导:参数重要性分析。
PLoS One. 2021 Oct 28;16(10):e0258721. doi: 10.1371/journal.pone.0258721. eCollection 2021.
6
Analysis of waveform and amplitude of mouse rod and cone flash responses.分析小鼠视杆和视锥闪光反应的波形和幅度。
J Physiol. 2021 Jul;599(13):3295-3312. doi: 10.1113/JP281225. Epub 2021 Jun 8.
7
Position of rhodopsin photoisomerization on the disk surface confers variability to the rising phase of the single photon response in vertebrate rod photoreceptors.视紫红质光异构化的位置赋予脊椎动物视杆感光细胞单光子反应上升相的可变性。
PLoS One. 2020 Oct 14;15(10):e0240527. doi: 10.1371/journal.pone.0240527. eCollection 2020.
8
A kinetic analysis of mouse rod and cone photoreceptor responses.对小鼠视杆和视锥光感受器反应的动力学分析。
J Physiol. 2020 Sep;598(17):3747-3763. doi: 10.1113/JP279524. Epub 2020 Jul 14.
9
Local, nonlinear effects of cGMP and Ca2+ reduce single photon response variability in retinal rods.cGMP 和 Ca2+ 的局部非线性效应降低了视网膜杆状细胞的单光子反应变异性。
PLoS One. 2019 Dec 5;14(12):e0225948. doi: 10.1371/journal.pone.0225948. eCollection 2019.
10
Multi-scale, numerical modeling of spatio-temporal signaling in cone phototransduction.圆锥光感传导时空信号的多尺度数值建模。
PLoS One. 2019 Jul 25;14(7):e0219848. doi: 10.1371/journal.pone.0219848. eCollection 2019.

本文引用的文献

1
Mathematical models of protein kinase signal transduction.蛋白激酶信号转导的数学模型。
Mol Cell. 2002 May;9(5):957-70. doi: 10.1016/s1097-2765(02)00528-2.
2
Calcium diffusion coefficient in rod photoreceptor outer segments.视杆光感受器外段中的钙扩散系数。
Biophys J. 2002 Feb;82(2):728-39. doi: 10.1016/S0006-3495(02)75435-0.
3
The cGMP-gated channel and related glutamic acid-rich proteins interact with peripherin-2 at the rim region of rod photoreceptor disc membranes.环磷酸鸟苷门控通道及相关富含谷氨酸的蛋白在视杆光感受器盘膜边缘区域与外周蛋白-2相互作用。
J Biol Chem. 2001 Dec 21;276(51):48009-16. doi: 10.1074/jbc.M108941200. Epub 2001 Oct 18.
4
Activation, deactivation, and adaptation in vertebrate photoreceptor cells.脊椎动物光感受器细胞中的激活、失活和适应
Annu Rev Neurosci. 2001;24:779-805. doi: 10.1146/annurev.neuro.24.1.779.
5
Membrane protein diffusion sets the speed of rod phototransduction.膜蛋白扩散决定了视杆光转导的速度。
Nature. 2001 May 3;411(6833):90-4. doi: 10.1038/35075083.
6
The role of steady phosphodiesterase activity in the kinetics and sensitivity of the light-adapted salamander rod photoresponse.稳定的磷酸二酯酶活性在光适应蝾螈视杆光反应动力学和敏感性中的作用。
J Gen Physiol. 2000 Dec;116(6):795-824. doi: 10.1085/jgp.116.6.795.
7
The gain of rod phototransduction: reconciliation of biochemical and electrophysiological measurements.视杆光转导增益:生化与电生理测量结果的协调
Neuron. 2000 Sep;27(3):525-37. doi: 10.1016/s0896-6273(00)00063-5.
8
Binding of the cGMP-gated channel to the Na/Ca-K exchanger in rod photoreceptors.在视杆光感受器中,cGMP门控通道与钠/钙-钾交换体的结合。
J Biol Chem. 2000 May 5;275(18):13448-54. doi: 10.1074/jbc.275.18.13448.
9
A synthetic oscillatory network of transcriptional regulators.转录调节因子的合成振荡网络。
Nature. 2000 Jan 20;403(6767):335-8. doi: 10.1038/35002125.
10
From molecular to modular cell biology.从分子细胞生物学到模块化细胞生物学。
Nature. 1999 Dec 2;402(6761 Suppl):C47-52. doi: 10.1038/35011540.