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一项针对年龄相关性黄斑变性的全基因组扫描为与多个染色体区域的连锁提供了证据。

A genomewide scan for age-related macular degeneration provides evidence for linkage to several chromosomal regions.

作者信息

Seddon Johanna M, Santangelo Susan L, Book Kathryn, Chong Sandy, Cote Jennifer

机构信息

Ophthalmology/Epidemiology Unit, Massachusetts Eye and Ear Infirmary, Harvard Medical School, Boston, MA 02114, USA.

出版信息

Am J Hum Genet. 2003 Oct;73(4):780-90. doi: 10.1086/378505. Epub 2003 Aug 22.

Abstract

We report the results of a genomewide scan for age-related macular degeneration (AMD) in 158 multiplex families. AMD classification was based on fundus photography and was assigned a grade ranging from 1 (no disease) to 5 (exudative disease). Genotyping was performed by the National Heart, Lung, and Blood Institute Mammalian Genotyping Service at Marshfield (404 short tandem repeat markers). The sample included 158 families with two or more siblings with AMD, 490 affected individuals, 101 unaffected individuals, and 38 whose affection status was unknown. Relative pairs included 511 affected sibling, 28 avuncular, 53 cousin, 7 grandparent-grandchild, and 9 grand-avuncular pairs. Two-point parametric and multipoint parametric and nonparametric analyses were performed. Maximum two-point LOD scores of 1.0-2.0 were found for markers on chromosomes 1, 2, 8, 10, 14, 15, and 22. Multipoint analyses were consistent with the two-point results for chromosomes 1, 2, 8, 10, and 22 and provided evidence for additional linkage regions on chromosomes 3, 6, 8, 12, 16, and X. Our signals on chromosomes 1q, 6p, and 10q are consistent with some other previously published results. Significant linkage to AMD was found for one marker on chromosome 2, two adjacent markers on chromosome 3, two adjacent markers on chromosome 6, and seven contiguous markers on chromosome 8, with empirical P values of .00001. The consistency of many of the other signals across both two-point and multipoint, as well as parametric and nonparametric, analyses indicate several other regions worthy of follow-up.

摘要

我们报告了对158个多成员家庭进行的与年龄相关性黄斑变性(AMD)全基因组扫描的结果。AMD分类基于眼底照相,并被赋予从1级(无疾病)到5级(渗出性疾病)的等级。基因分型由位于马什菲尔德的美国国立心肺血液研究所哺乳动物基因分型服务中心进行(404个短串联重复标记)。样本包括158个有两个或更多患AMD兄弟姐妹的家庭、490名受影响个体、101名未受影响个体以及38名患病情况未知的个体。亲属对包括511对患病兄弟姐妹、28对叔侄/舅甥、53对堂兄弟姐妹/表兄弟姐妹、7对祖父母与孙子女以及9对叔祖/舅祖与孙侄/甥孙。进行了两点参数分析、多点参数分析和非参数分析。在1号、2号、8号、10号、14号、15号和22号染色体上的标记发现了最大两点LOD分数为1.0 - 2.0。多点分析与1号、2号、8号、10号和22号染色体的两点结果一致,并为3号、6号、8号、12号、16号和X染色体上的其他连锁区域提供了证据。我们在1q、6p和10q染色体上的信号与其他一些先前发表的结果一致。在2号染色体上的一个标记、3号染色体上的两个相邻标记、6号染色体上的两个相邻标记以及8号染色体上的七个连续标记发现了与AMD的显著连锁,经验P值为0.00001。许多其他信号在两点和多点以及参数和非参数分析中的一致性表明还有其他几个区域值得后续研究。

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