Doll Kenneth M, Bender Bruce R, Finke Richard G
Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA.
J Am Chem Soc. 2003 Sep 10;125(36):10877-84. doi: 10.1021/ja030120h.
The literature hypothesis that "the optimization of enzyme catalysis may entail the evolutionary implementation of chemical strategies that increase the probability of quantum-mechanical tunneling" is experimentally tested herein for the first time. The system employed is the key to being able to provide this first experimental test of the "enhanced hydrogen tunneling" hypothesis, one that requires a comparison of the three criteria diagnostic of tunneling (vide infra) for the same, or nearly the same, reaction with and without the enzyme. Specifically, studied herein are the adenosylcobalamin (AdoCbl, also known as coenzyme B(12))-dependent diol dehydratase model reactions of (i). H(D)() atom abstraction from ethylene glycol-d(0) and ethylene glycol-d(4) solvent by 5'-deoxyadenosyl radical (Ado()) and (ii.) the same H() abstraction reactions by the 8-methoxy-5'-deoxyadenosyl radical (8-MeOAdo()). The Ado() and 8-MeOAdo() radicals are generated by Co-C thermolysis of their respective precursors, AdoCbl and 8-MeOAdoCbl. Deuterium kinetic isotope effects (KIEs) of the H()(D()) abstraction reactions from ethylene glycol have been measured over a temperature range of 80-120 degrees C: KIE = 12.4 +/- 1.1 at 80 degrees C for Ado() and KIE = 12.5 +/- 0.9 at 80 degrees C for 8-MeOAdo() (values ca. 2-fold that of the predicted maximum primary times secondary ground-state zero-point energy (GS-ZPE) KIE of 6.4 at 80 degrees C). From the temperature dependence of the KIEs, zero-point activation energy differences ([E(D) - E(H)]) of 3.0 +/- 0.3 kcal mol(-)(1) for Ado() and 2.1 +/- 0.6 kcal mol(-)(1) for 8-MeOAdo() have been obtained, both of which are significantly larger than the nontunneling, zero-point energy only maximum of 1.2 kcal mol(-)(1). Pre-exponential factor ratios (A(H)/A(D)) of 0.16 +/- 0.07 for Ado() and 0.5 +/- 0.4 for 8-MeOAdo() are observed, both of which are significantly less than the 0.7 minimum for nontunneling behavior. The data provide strong evidence for the expected quantum mechanical tunneling in the Ado() and 8-MeOAdo()-mediated H() abstraction reactions from ethylene glycol. More importantly, a comparison of these enzyme-free tunneling data to the same KIE, (E(D) - E(H)) and A(H)/A(D) data for a closely related, Ado()-mediated H() abstraction reaction from a primary CH(3)- group in AdoCbl-dependent methylmalonyl-CoA mutase shows the enzymic and enzyme-free data sets are identical within experimental error. The Occam's Razor conclusion is that at least this adenosylcobalamin-dependent enzyme has not evolved to enhance quantum mechanical tunneling, at least within the present error bars. Instead, this B(12)-dependent enzyme simply exploits the identical level of quantum mechanical tunneling that is available in the enzyme-free, solution-based H() abstraction reaction. The results also require a similar, if not identical, barrier width and height within experimental error for the H(*) abstraction both within, and outside of, the enzyme.
“酶催化的优化可能需要进化实施化学策略以增加量子力学隧穿的概率”这一文献假设在此首次得到实验验证。所采用的系统是能够对“增强氢隧穿”假设进行首次实验验证的关键,该假设需要对相同或几乎相同反应在有无酶的情况下的三种隧穿诊断标准(见下文)进行比较。具体而言,本文研究了腺苷钴胺素(AdoCbl,也称为辅酶B₁₂)依赖性二醇脱水酶的模型反应:(i)5'-脱氧腺苷自由基(Ado*)从乙二醇-d₀和乙二醇-d₄溶剂中夺取H(D)原子;(ii)8-甲氧基-5'-脱氧腺苷自由基(8-MeOAdo)进行相同的H夺取反应。Ado和8-MeOAdo自由基通过其各自前体AdoCbl和8-MeOAdoCbl的Co-C热解产生。在80 - 120℃的温度范围内测量了从乙二醇中夺取H(D*)原子反应的氘动力学同位素效应(KIEs):80℃时Ado的KIE = 12.4 ± 1.1,80℃时8-MeOAdo的KIE = 12.5 ± 0.9(这些值约为80℃时预测的最大一级乘以二级基态零点能(GS-ZPE)KIE 6.4的2倍)。根据KIEs的温度依赖性,得到Ado的零点活化能差([E(D) - E(H)])为3.0 ± 0.3 kcal mol⁻¹,8-MeOAdo的为2.1 ± 0.6 kcal mol⁻¹,两者均显著大于非隧穿情况下仅零点能的最大值1.2 kcal mol⁻¹。观察到Ado的指前因子比(A(H)/A(D))为0.16 ± 0.07,8-MeOAdo的为0.5 ± 0.4,两者均显著小于非隧穿行为的最小值0.7。这些数据为Ado和8-MeOAdo介导的从乙二醇中夺取H反应中预期的量子力学隧穿提供了有力证据。更重要的是,将这些无酶隧穿数据与腺苷钴胺素依赖性甲基丙二酰辅酶A变位酶中与Ado介导的从初级CH₃-基团夺取H反应密切相关的相同KIE、(E(D) - E(H))和A(H)/A(D)数据进行比较,结果表明在实验误差范围内酶促和无酶数据集是相同的。根据奥卡姆剃刀原理得出的结论是,至少这种腺苷钴胺素依赖性酶并没有进化以增强量子力学隧穿,至少在当前误差范围内是这样。相反,这种B₁₂依赖性酶只是利用了无酶的基于溶液的H夺取反应中可用的相同水平的量子力学隧穿。结果还要求在实验误差范围内,酶内和酶外的H*夺取反应具有相似(如果不是相同)的势垒宽度和高度。