Narayan Mahesh, Welker Ervin, Wanjalla Celestine, Xu Guoqiang, Scheraga Harold A
Baker Laboratory of Chemistry and Chemical Biology, Cornell University, Ithaca, New York 14853-1301, USA.
Biochemistry. 2003 Sep 16;42(36):10783-9. doi: 10.1021/bi030141o.
The oxidative folding pathway(s) of single-domain proteins can be characterized by the existence, stability, and structural nature of the intermediates that populate the regeneration pathway. Structured intermediates can be disulfide-secure in that they are able to protect their existing (native) disulfide bonds from SH/SS reshuffling and reduction reactions, and thereby form the native protein directly, i.e., by oxidation of their exposed (or locally exposable) thiols. Alternatively, they can be disulfide-insecure, usually requiring global unfolding to expose their free thiols. However, such an unfolding event also exposes the existing native disulfide bonds. Thus, the subsequent oxidation reaction to form the native protein in a disulfide-insecure intermediate competes with the intramolecular attack by the thiols of the macromolecule on its own native disulfide bonds, resulting in a large population of intermediates that are reshuffled instead of being oxidized. Under stabilizing conditions, disulfide-insecure species become long-lived kinetically trapped intermediates that slowly and only indirectly convert to the native protein through reshuffling reactions. In this study, trans-Pt(en)(2)Cl(2), a strong oxidizing agent which has not traditionally been used in oxidative folding, was applied to shift the competition between reshuffling and oxidation reactions in des [58-110] and des [26-84], two long-lived disulfide-insecure intermediates of RNase A, and oxidize them directly under stable conditions to form the native protein. Such a successful direct conversion of kinetically trapped intermediates to the native molecule by trans-Pt(en)(2)Cl(2) may be helpful in facilitating the oxidative folding processes of multi-disulfide-containing proteins in general.
单结构域蛋白的氧化折叠途径可以通过再生途径中中间体的存在、稳定性和结构性质来表征。结构化中间体可以是二硫键稳定的,因为它们能够保护其现有的(天然)二硫键免受SH/SS重排和还原反应的影响,从而直接形成天然蛋白,即通过其暴露的(或局部可暴露的)硫醇的氧化。或者,它们可能是二硫键不稳定的,通常需要全局展开以暴露其游离硫醇。然而,这样的展开事件也会暴露现有的天然二硫键。因此,在二硫键不稳定的中间体中形成天然蛋白的后续氧化反应与大分子的硫醇对其自身天然二硫键的分子内攻击相互竞争,导致大量中间体发生重排而非被氧化。在稳定条件下,二硫键不稳定的物种会成为寿命较长的动力学捕获中间体,它们通过重排反应缓慢且仅间接转化为天然蛋白。在本研究中,反式-Pt(en)(2)Cl(2),一种传统上未用于氧化折叠的强氧化剂,被用于改变des [58 - 110]和des [26 - 84](核糖核酸酶A的两种寿命较长的二硫键不稳定中间体)中重排和氧化反应之间的竞争,并在稳定条件下直接将它们氧化以形成天然蛋白。反式-Pt(en)(2)Cl(2)将动力学捕获中间体成功直接转化为天然分子,这总体上可能有助于促进含多个二硫键蛋白的氧化折叠过程。