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组氨酸84在延伸因子Tu中对核糖体上GTP水解化学步骤的关键作用。

Essential role of histidine 84 in elongation factor Tu for the chemical step of GTP hydrolysis on the ribosome.

作者信息

Daviter Tina, Wieden Hans-Joachim, Rodnina Marina V

机构信息

Institute of Physical Biochemistry, University of Witten/Herdecke, Stockumer Strasse 10, 58448, Witten, Germany

出版信息

J Mol Biol. 2003 Sep 19;332(3):689-99. doi: 10.1016/s0022-2836(03)00947-1.

Abstract

Elongation factor Tu (EF-Tu) is a GTP-binding protein that delivers aminoacyl-tRNA to the A site of the ribosome during protein synthesis. The mechanism of GTP hydrolysis in EF-Tu on the ribosome is poorly understood. It is known that mutations of a conserved histidine residue in the switch II region of the factor, His84 in Escherichia coli EF-Tu, impair GTP hydrolysis. However, the partial reaction which is directly affected by mutations of His84 was not identified and the effect on GTP hydrolysis was not quantified. Here, we show that the replacement of His84 with Ala reduces the rate constant of GTP hydrolysis more than 10(6)-fold, whereas the preceding steps of ternary complex binding to the ribosome, codon recognition and, most importantly, the GTPase activation step are affected only slightly. These results show that His84 plays a key role in the chemical step of GTP hydrolysis. Rate constants of GTP hydrolysis by wild-type EF-Tu, measured using the slowly hydrolyzable GTP analog, GTPgammaS, showed no dependence on pH, indicating that His84 does not act as a general base. We propose that the catalytic role of His84 is to stabilize the transition state of GTP hydrolysis by hydrogen bonding to the attacking water molecule or, possibly, the gamma-phosphate group of GTP.

摘要

延伸因子Tu(EF-Tu)是一种GTP结合蛋白,在蛋白质合成过程中负责将氨酰tRNA转运至核糖体的A位点。目前,对于核糖体上EF-Tu中GTP水解的机制仍知之甚少。已知在该因子开关II区域中一个保守的组氨酸残基发生突变(大肠杆菌EF-Tu中的His84)会损害GTP水解。然而,尚未确定受His84突变直接影响的部分反应,并且未对GTP水解的影响进行量化。在此,我们表明将His84替换为丙氨酸会使GTP水解的速率常数降低超过10^6倍,而三元复合物与核糖体结合、密码子识别以及最重要的GTP酶激活步骤的先前步骤仅受到轻微影响。这些结果表明His84在GTP水解的化学步骤中起关键作用。使用缓慢水解的GTP类似物GTPγS测量野生型EF-Tu的GTP水解速率常数,结果显示其与pH无关,这表明His84并非作为一般碱发挥作用。我们提出His84的催化作用是通过与进攻水分子或可能与GTP的γ-磷酸基团形成氢键来稳定GTP水解的过渡态。

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