Vorstenbosch E, Pape T, Rodnina M V, Kraal B, Wintermeyer W
Leiden Institute of Chemistry, Department of Biochemistry, Leiden University, The Netherlands.
EMBO J. 1996 Dec 2;15(23):6766-74.
Elongation factor Tu (EF-Tu) from Escherichia coli carrying the mutation G222D is unable to hydrolyze GTP on the ribosome and to sustain polypeptide synthesis at near physiological Mg2+ concentration, although the interactions with guanine nucleotides and aminoacyl-tRNA are not changed significantly. GTPase and polypeptide synthesis activities are restored by increasing the Mg2+ concentration. Here we report a pre-steady-state kinetic study of the binding of the ternary complexes of wild-type and mutant EF-Tu with Phe-tRNA(Phe) and GTP to the A site of poly(U)-programed ribosomes. The kinetic parameters of initial binding to the ribosome and subsequent codon-anticodon interaction are similar for mutant and wild-type EF-Tu, independent of the Mg2+ concentration, suggesting that the initial interaction with the ribosome is not affected by the mutation. Codon recognition following initial binding is also not affected by the mutation. The main effect of the G222D mutation is the inhibition, at low Mg2+ concentration, of codon-induced structural transitions of the tRNA and, in particular, their transmission to EF-Tu that precedes GTP hydrolysis and the subsequent steps of A-site binding. Increasing the Mg2+ concentration to 10 mM restores the complete reaction sequence of A-site binding at close to wild-type rates. The inhibition of the structural transitions is probably due to the interference of the negative charge introduced by the mutation with negative charges either of the 3' terminus of the tRNA, bound in the vicinity of the mutated amino acid in domain 2 of EF-Tu, or of the ribosome. Increasing the Mg2+ concentration appears to overcome the inhibition by screening the negative charges.
携带G222D突变的大肠杆菌延伸因子Tu(EF-Tu)在核糖体上无法水解GTP,并且在接近生理浓度的Mg2+条件下无法维持多肽合成,尽管其与鸟嘌呤核苷酸和氨酰-tRNA的相互作用没有明显改变。通过提高Mg2+浓度可恢复GTPase和多肽合成活性。在此,我们报告了一项关于野生型和突变型EF-Tu与苯丙氨酰-tRNA(Phe)和GTP的三元复合物结合到聚尿苷酸(poly(U))编程核糖体A位点的前稳态动力学研究。突变型和野生型EF-Tu与核糖体初始结合以及随后密码子-反密码子相互作用的动力学参数相似,与Mg2+浓度无关,这表明与核糖体的初始相互作用不受该突变影响。初始结合后的密码子识别也不受该突变影响。G222D突变的主要影响是在低Mg2+浓度下抑制tRNA的密码子诱导结构转变,特别是在GTP水解和A位点结合后续步骤之前传递给EF-Tu的结构转变。将Mg2+浓度提高到10 mM可恢复A位点结合的完整反应序列,速率接近野生型。结构转变的抑制可能是由于突变引入的负电荷干扰了tRNA 3'末端的负电荷,tRNA 3'末端结合在EF-Tu结构域2中突变氨基酸附近,或者干扰了核糖体的负电荷。提高Mg2+浓度似乎通过屏蔽负电荷克服了这种抑制作用。