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中国丙型肝炎病毒的基因组分型

Genomic typing of hepatitis C viruses present in China.

作者信息

Liu K, Hu Z, Li H, Prince A M, Inchauspe G

机构信息

Laboratory of Virology and Parasitology, Lindsley F. Kimball Research Institute, New York Blood Center, New York 10021.

出版信息

Gene. 1992 May 15;114(2):245-50. doi: 10.1016/0378-1119(92)90582-a.

DOI:10.1016/0378-1119(92)90582-a
PMID:1318245
Abstract

Hepatitis C virus (HCV) genomic clones were obtained from the serum of Chinese HCV carriers using a polymerase chain reaction-based approach. Consensus sequences were derived from (1) the structural region (nt 1-1543) for one carrier, (2) the hypervariable region V (nt 1156-1233) from four carriers and (3) region V3 from four carriers. Region V3, located in the nonstructural domain NS5 (nt 7066-7137), has been previously shown to be a particularly good marker for the genomic typing of HCV isolates [Inchauspe et al., Proc. Natl. Acad. Sci. USA 88 (1991) 10292-10296]. Comparison of these sequences with sequences from geographically distinct HCV isolates indicates that Chinese HCV strains are closely related to, though distinguishable from, Japanese prototype strains. One amino acid motif, GGAA, located in region V, was found to be conserved only among Chinese isolates. This may define a new subgroup among HCV isolates.

摘要

采用基于聚合酶链反应的方法,从中国丙型肝炎病毒(HCV)携带者的血清中获得了HCV基因组克隆。共有序列来自:(1)一名携带者的结构区(核苷酸1 - 1543);(2)四名携带者的高变区V(核苷酸1156 - 1233);(3)四名携带者的V3区。V3区位于非结构域NS5(核苷酸7066 - 7137),先前已证明它是HCV分离株基因组分型的一个特别好的标志物[因乔斯普等人,《美国国家科学院院刊》88(1991)10292 - 10296]。将这些序列与来自地理上不同的HCV分离株的序列进行比较表明,中国HCV毒株与日本原型毒株密切相关,尽管可以区分。在V区发现的一个氨基酸基序GGAA仅在中国分离株中保守。这可能定义了HCV分离株中的一个新亚组。

相似文献

1
Genomic typing of hepatitis C viruses present in China.中国丙型肝炎病毒的基因组分型
Gene. 1992 May 15;114(2):245-50. doi: 10.1016/0378-1119(92)90582-a.
2
Genomic typing of hepatitis C viruses from Korean patients: implications of genome variation in the E2/NS1 region.韩国患者丙型肝炎病毒的基因分型:E2/NS1区域基因组变异的影响
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Characterization of nucleotide sequences from European hepatitis C virus isolates.欧洲丙型肝炎病毒分离株核苷酸序列的特征分析。
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引用本文的文献

1
[Characteristics of the hepatitis C virus and viral predictors of therapeutic response].[丙型肝炎病毒的特征及治疗反应的病毒预测指标]
Med Klin (Munich). 1999 Nov 15;94(11):626-32. doi: 10.1007/BF03045003.
2
Mutations in a hydrophilic part of the core gene of hepatitis C virus in patients with hepatocellular carcinoma in China.中国肝细胞癌患者丙型肝炎病毒核心基因亲水区的突变
J Gastroenterol. 1997 Feb;32(1):47-55. doi: 10.1007/BF01213296.
3
Virology of hepatitis C virus.丙型肝炎病毒的病毒学
Clin Ther. 1996;18 Suppl B:9-36. doi: 10.1016/s0149-2918(96)80193-7.
4
At least 12 genotypes of hepatitis C virus predicted by sequence analysis of the putative E1 gene of isolates collected worldwide.通过对全球收集的分离株推定的E1基因进行序列分析预测出至少12种丙型肝炎病毒基因型。
Proc Natl Acad Sci U S A. 1993 Sep 1;90(17):8234-8. doi: 10.1073/pnas.90.17.8234.
5
Variability of hepatitis C virus.丙型肝炎病毒的变异性
Hepatology. 1995 Feb;21(2):570-83. doi: 10.1002/hep.1840210243.