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微生物的群体遗传学

Population genetics of microbial organisms.

作者信息

Hartl D L

机构信息

Washington University School of Medicine, St Louis, Missouri.

出版信息

Curr Opin Genet Dev. 1992 Dec;2(6):937-42. doi: 10.1016/s0959-437x(05)80119-4.

DOI:10.1016/s0959-437x(05)80119-4
PMID:1335810
Abstract

Population data suggest that many parasitic protozoa (e.g. Trypanosoma, Leishmania, Entamoeba and Giardia) reproduce clonally, but this hypothesis has been highly controversial for Plasmodium falciparum. Although reproduction is predominantly clonal in the enteric bacteria Escherichia coli and Salmonella, the level of recombination affecting short (< 1 kb) regions of the chromosome is sufficient such that many genes are obviously mosaics of different ancestries. Transposable insertion sequences in E. coli are examples of selfish DNA whose short-term population dynamics are determined mainly by transposition and horizontal transmission among strains balanced against the regulation of transposition as a function of copy number, and negative effects on fitness. Occasional advantageous effects of transposable elements have also been documented.

摘要

种群数据表明,许多寄生原生动物(如锥虫、利什曼原虫、内阿米巴和贾第虫)进行无性繁殖,但这一假说对于恶性疟原虫一直存在很大争议。虽然肠道细菌大肠杆菌和沙门氏菌主要进行无性繁殖,但影响染色体短片段(<1 kb)区域的重组水平足以使许多基因明显成为不同谱系的嵌合体。大肠杆菌中的转座插入序列是自私DNA的例子,其短期种群动态主要由转座以及菌株间的水平传播决定,同时受到作为拷贝数函数的转座调控以及对适应性的负面影响的平衡。转座元件偶尔产生的有利影响也有文献记载。

相似文献

1
Population genetics of microbial organisms.微生物的群体遗传学
Curr Opin Genet Dev. 1992 Dec;2(6):937-42. doi: 10.1016/s0959-437x(05)80119-4.
2
A clonal theory of parasitic protozoa: the population structures of Entamoeba, Giardia, Leishmania, Naegleria, Plasmodium, Trichomonas, and Trypanosoma and their medical and taxonomical consequences.寄生原生动物的克隆理论:内阿米巴属、贾第虫属、利什曼原虫属、耐格里属、疟原虫属、毛滴虫属及锥虫属的种群结构及其医学和分类学意义。
Proc Natl Acad Sci U S A. 1990 Apr;87(7):2414-8. doi: 10.1073/pnas.87.7.2414.
3
The evolution of DNA sequences in Escherichia coli.大肠杆菌中DNA序列的进化
Philos Trans R Soc Lond B Biol Sci. 1986 Jan 29;312(1154):191-204. doi: 10.1098/rstb.1986.0001.
4
Distribution of insertion sequence IS1 in multiple-antibiotic resistant clinical Enterobacteriaceae strains.插入序列IS1在多重耐药临床肠杆菌科菌株中的分布
FEMS Microbiol Lett. 1992 Jun 1;72(2):189-93. doi: 10.1016/0378-1097(92)90527-u.
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The population genetics of Escherichia coli.大肠杆菌的群体遗传学
Annu Rev Genet. 1984;18:31-68. doi: 10.1146/annurev.ge.18.120184.000335.
6
Dynamics of bacterial insertion sequences: can transposition bursts help the elements persist?细菌插入序列的动力学:转座爆发有助于元件持续存在吗?
BMC Evol Biol. 2015 Dec 21;15:288. doi: 10.1186/s12862-015-0560-5.
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A molecular strategy for the study of bacterial invasion.
Rev Infect Dis. 1987 Sep-Oct;9 Suppl 5:S450-5. doi: 10.1093/clinids/9.supplement_5.s450.
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Frequency of IS1-mediated molecular events in different members of the family Enterobacteriaceae.肠杆菌科不同成员中IS1介导的分子事件的频率。
J Bacteriol. 1987 Nov;169(11):4946-9. doi: 10.1128/jb.169.11.4946-4949.1987.
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Evolution of transposable elements: an IS10 insertion increases fitness in Escherichia coli.转座元件的进化:IS10插入增加大肠杆菌的适应性。
Mol Biol Evol. 1985 Sep;2(5):359-69. doi: 10.1093/oxfordjournals.molbev.a040356.
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IS15, a new insertion sequence widely spread in R plasmids of gram-negative bacteria.IS15,一种广泛存在于革兰氏阴性菌R质粒中的新型插入序列。
Mol Gen Genet. 1983;189(1):102-12. doi: 10.1007/BF00326061.

引用本文的文献

1
Reproduction in Trypanosomatids: Past and Present.锥虫的繁殖:过去与现在
Biology (Basel). 2021 May 27;10(6):471. doi: 10.3390/biology10060471.
2
Real-time PCR for quantitative analysis of human commensal Escherichia coli populations reveals a high frequency of subdominant phylogroups.实时 PCR 定量分析人体共生大肠杆菌种群揭示了亚优势菌谱系的高频出现。
Appl Environ Microbiol. 2013 Aug;79(16):5005-12. doi: 10.1128/AEM.01423-13. Epub 2013 Jun 14.
3
Cryptic lineages of the genus Escherichia.大肠杆菌属的隐秘谱系。
Appl Environ Microbiol. 2009 Oct;75(20):6534-44. doi: 10.1128/AEM.01262-09. Epub 2009 Aug 21.
4
Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution.限制性修饰系统作为自私移动元件的行为及其对基因组进化的影响。
Nucleic Acids Res. 2001 Sep 15;29(18):3742-56. doi: 10.1093/nar/29.18.3742.
5
Malaria's Eve: evidence of a recent population bottleneck throughout the world populations of Plasmodium falciparum.疟疾前夕:恶性疟原虫全球种群近期出现种群瓶颈的证据。
Proc Natl Acad Sci U S A. 1998 Apr 14;95(8):4425-30. doi: 10.1073/pnas.95.8.4425.
6
Plasmodium falciparum antigenic diversity: evidence of clonal population structure.恶性疟原虫的抗原多样性:克隆群体结构的证据
Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):13040-5. doi: 10.1073/pnas.94.24.13040.