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短杆菌肽A中的构象重排:从双链左手螺旋转变为单链右手螺旋。

A conformational rearrangement in gramicidin A: from a double-stranded left-handed to a single-stranded right-handed helix.

作者信息

Zhang Z, Pascal S M, Cross T A

机构信息

Department of Chemistry, Florida State University, Tallahassee 32306-3006.

出版信息

Biochemistry. 1992 Sep 22;31(37):8822-8. doi: 10.1021/bi00152a019.

DOI:10.1021/bi00152a019
PMID:1382580
Abstract

A conformational transition is described for the polypeptide, gramicidin A, in which a dimer that forms a left-handed intertwined antiparallel helix is converted to a single-stranded amino terminus to amino terminus right-handed helix. The starting structure is determined here by solution NMR methods while reference is made to the well-established folding motif of gramicidin in a lipid bilayer for the ultimate conformation of this transition. Furthermore, an organic solvent system of benzene and ethanol in which gramicidin has a unique conformation is identified. This conformation is shown to be very similar to that derived from X-ray diffraction of crystals prepared from a similar solvent system.

摘要

描述了短杆菌肽A多肽的一种构象转变,其中形成左手缠绕反平行螺旋的二聚体转变为从氨基端到氨基端的单链右手螺旋。这里通过溶液核磁共振方法确定起始结构,同时参考脂质双分子层中短杆菌肽已确立的折叠基序来确定该转变的最终构象。此外,还鉴定出一种苯和乙醇的有机溶剂体系,短杆菌肽在其中具有独特的构象。这种构象显示与由类似溶剂体系制备的晶体的X射线衍射所得到的构象非常相似。

相似文献

1
A conformational rearrangement in gramicidin A: from a double-stranded left-handed to a single-stranded right-handed helix.短杆菌肽A中的构象重排:从双链左手螺旋转变为单链右手螺旋。
Biochemistry. 1992 Sep 22;31(37):8822-8. doi: 10.1021/bi00152a019.
2
Conformation states of gramicidin A along the pathway to the formation of channels in model membranes determined by 2D NMR and circular dichroism spectroscopy.通过二维核磁共振和圆二色光谱法确定短杆菌肽A在模型膜中形成通道的过程中的构象状态。
Biochemistry. 1994 Jun 7;33(22):6773-83. doi: 10.1021/bi00188a005.
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Gramicidin D conformation, dynamics and membrane ion transport.短杆菌肽D的构象、动力学及膜离子转运
Biopolymers. 1999;51(2):129-44. doi: 10.1002/(SICI)1097-0282(1999)51:2<129::AID-BIP3>3.0.CO;2-Y.
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High-resolution conformation of gramicidin A in a lipid bilayer by solid-state NMR.通过固态核磁共振确定脂双层中短杆菌肽A的高分辨率构象。
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The conformational preference of gramicidin channels is a function of lipid bilayer thickness.短杆菌肽通道的构象偏好是脂质双层厚度的一个函数。
FEBS Lett. 1997 Jul 21;412(1):15-20. doi: 10.1016/s0014-5793(97)00709-6.
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Validation of the single-stranded channel conformation of gramicidin A by solid-state NMR.通过固态核磁共振验证短杆菌肽A的单链通道构象
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The conducting form of gramicidin A is a right-handed double-stranded double helix.短杆菌肽A的传导形式是右手双链双螺旋。
Proc Natl Acad Sci U S A. 1998 Oct 27;95(22):12950-5. doi: 10.1073/pnas.95.22.12950.
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An asymmetric ion channel derived from gramicidin A. Synthesis, function and NMR structure.源自短杆菌肽A的不对称离子通道。合成、功能及核磁共振结构
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Polypeptide conformational space. Dynamics by solution NMR disorder by X-ray crystallography.多肽构象空间。溶液核磁共振法研究动力学,X射线晶体学研究无序状态。
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[Spatial structure of gramicidin A in organic solvents. 1H-NMR analysis of conformation heterogeneity in ethanol].[有机溶剂中短杆菌肽A的空间结构。乙醇中构象异质性的1H-NMR分析]
Bioorg Khim. 1987 Nov;13(11):1501-22.

引用本文的文献

1
Monitoring gramicidin conformations in membranes: a fluorescence approach.监测膜中短杆菌肽的构象:一种荧光方法。
Biophys J. 2004 Aug;87(2):831-43. doi: 10.1529/biophysj.104.041715.
2
Water: foldase activity in catalyzing polypeptide conformational rearrangements.水:催化多肽构象重排中的折叠酶活性。
Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9057-61. doi: 10.1073/pnas.96.16.9057.
3
Solid-state NMR and hydrogen-deuterium exchange in a bilayer-solubilized peptide: structural and mechanistic implications.双层增溶肽中的固态核磁共振与氢氘交换:结构及机制意义
Biophys J. 1999 Mar;76(3):1179-89. doi: 10.1016/S0006-3495(99)77282-6.
4
Heterodimer formation and crystal nucleation of gramicidin D.短杆菌肽D的异二聚体形成与晶体成核
Biophys J. 1998 Nov;75(5):2135-46. doi: 10.1016/S0006-3495(98)77656-8.
5
Gramicidin channels in phospholipid bilayers with unsaturated acyl chains.具有不饱和酰基链的磷脂双分子层中的短杆菌肽通道。
Biophys J. 1997 Sep;73(3):1310-9. doi: 10.1016/S0006-3495(97)78164-5.
6
Protein stability and conformational rearrangements in lipid bilayers: linear gramicidin, a model system.脂质双分子层中的蛋白质稳定性和构象重排:线性短杆菌肽,一个模型系统。
Biophys J. 1997 Aug;73(2):614-23. doi: 10.1016/S0006-3495(97)78097-4.
7
Conformational trapping in a membrane environment: a regulatory mechanism for protein activity?膜环境中的构象捕获:一种蛋白质活性的调节机制?
Proc Natl Acad Sci U S A. 1996 Jun 11;93(12):5872-6. doi: 10.1073/pnas.93.12.5872.
8
High-resolution structure and dynamic implications for a double-helical gramicidin A conformer.短杆菌肽A双螺旋构象体的高分辨率结构及其动力学意义
J Biomol NMR. 1993 Sep;3(5):495-513. doi: 10.1007/BF00174606.
9
Orientational constraints as three-dimensional structural constraints from chemical shift anisotropy: the polypeptide backbone of gramicidin A in a lipid bilayer.作为来自化学位移各向异性的三维结构约束的取向约束:脂双层中短杆菌肽A的多肽主链。
Protein Sci. 1993 Apr;2(4):532-42. doi: 10.1002/pro.5560020405.