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作为来自化学位移各向异性的三维结构约束的取向约束:脂双层中短杆菌肽A的多肽主链。

Orientational constraints as three-dimensional structural constraints from chemical shift anisotropy: the polypeptide backbone of gramicidin A in a lipid bilayer.

作者信息

Mai W, Hu W, Wang C, Cross T A

机构信息

Institute of Molecular Biophysics, Florida State University, Tallahassee 32306-3006.

出版信息

Protein Sci. 1993 Apr;2(4):532-42. doi: 10.1002/pro.5560020405.

DOI:10.1002/pro.5560020405
PMID:7686068
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC2142368/
Abstract

Chemical shifts observed from samples that are uniformly aligned with respect to the magnetic field can be used as very high-resolution structural constraints. This constraint takes the form of an orientational constraint rather than the more familiar distance constraint. The accuracy of these constraints is dependent upon the quality of the tensor characterization. Both tensor element magnitudes and tensor orientations with respect to the molecular frame need to be considered. Here these constraints have been used to evaluate models for the channel conformation of gramicidin A. Of the three models used, the one experimentally derived model of gramicidin in sodium dodecyl sulfate micelles fits the data least well.

摘要

从相对于磁场均匀排列的样品中观察到的化学位移可作为非常高分辨率的结构约束。这种约束采取取向约束的形式,而不是更常见的距离约束。这些约束的准确性取决于张量表征的质量。需要考虑张量元素大小和相对于分子框架的张量取向。在这里,这些约束已被用于评估短杆菌肽A通道构象的模型。在所使用的三个模型中,实验推导的短杆菌肽在十二烷基硫酸钠胶束中的模型与数据拟合得最差。

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本文引用的文献

1
The dynamics of the intrinsic membrane polypeptide gramicidin a in phospholipid bilayers: a solid state carbon-13 NMR study.磷脂双分子层中内在膜多肽短杆菌肽A的动力学:一项固态碳-13核磁共振研究。
Biophys J. 1986 Jan;49(1):117-8. doi: 10.1016/S0006-3495(86)83617-7.
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Structure and dynamics of ion transport through gramicidin A.离子通过短杆菌肽A的转运结构与动力学
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The gramicidin A transmembrane channel: a proposed pi(L,D) helix.短杆菌肽A跨膜通道:一种推测的π(L,D)螺旋
Proc Natl Acad Sci U S A. 1971 Mar;68(3):672-6. doi: 10.1073/pnas.68.3.672.
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Gramicidin cation channel: an experimental determination of the right-handed helix sense and verification of beta-type hydrogen bonding.短杆菌肽阳离子通道:右手螺旋方向的实验测定及β型氢键的验证
Biochemistry. 1989 Nov 28;28(24):9379-85. doi: 10.1021/bi00450a019.
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Water and polypeptide conformations in the gramicidin channel. A molecular dynamics study.短杆菌肽通道中的水与多肽构象。一项分子动力学研究。
Biophys J. 1989 Aug;56(2):253-61. doi: 10.1016/S0006-3495(89)82671-2.
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Solid phase peptide synthesis of 15N-gramicidins A, B, and C and high performance liquid chromatographic purification.15N-短杆菌肽A、B和C的固相肽合成及高效液相色谱纯化
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7
The membrane as an environment of minimal interconversion. A circular dichroism study on the solvent dependence of the conformational behavior of gramicidin in diacylphosphatidylcholine model membranes.作为最小互变环境的膜。关于短杆菌肽在二酰基磷脂酰胆碱模型膜中构象行为的溶剂依赖性的圆二色性研究。
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8
Three-dimensional structure at 0.86 A of the uncomplexed form of the transmembrane ion channel peptide gramicidin A.跨膜离子通道肽短杆菌肽A未复合形式在0.86埃分辨率下的三维结构。
Science. 1988 Jul 8;241(4862):188-91. doi: 10.1126/science.2455345.
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The gramicidin pore: crystal structure of a cesium complex.短杆菌肽通道:铯复合物的晶体结构
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10
The normal modes of the gramicidin-A dimer channel.短杆菌肽A二聚体通道的正常模式。
Biophys J. 1988 Mar;53(3):297-309. doi: 10.1016/S0006-3495(88)83107-2.