Chromosome rearrangements in evolution: From gene order to genome sequence and back.
作者信息
Sankoff David, Nadeau Joseph H
机构信息
Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, ON, Canada K1N 6N5.
出版信息
Proc Natl Acad Sci U S A. 2003 Sep 30;100(20):11188-9. doi: 10.1073/pnas.2035002100. Epub 2003 Sep 23.
Abstract
摘要
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3
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