Yang Cheng, Pflugrath J W, Courville D A, Stence C N, Ferrara Joseph D
Rigaku/MSC Inc, 9009 New Trails Drive, The Woodlands, TX 7738, USA.
Acta Crystallogr D Biol Crystallogr. 2003 Nov;59(Pt 11):1943-57. doi: 10.1107/s0907444903018547. Epub 2003 Oct 23.
Anomalous scattering with soft X-ray radiation opens new possibilities in phasing for macromolecular crystallography. Anomalous scattering from S atoms collected on an in-house chromium radiation source (lambda = 2.29 A) was used to phase the X-ray diffraction data of thaumatin (22 kDa) and trypsin (24 kDa) crystals. The contribution to the anomalous term, Deltaf" = 1.14 e(-), from sulfur for Cr Kalpha radiation is doubled compared with that for Cu Kalpha radiation, Deltaf" = 0.56 e(-). The direct-methods programs RANTAN or SHELXD successfully found sulfur positions using data sets with resolution limited to 3.5 A. The statistical phasing program SHARP was used to produce the electron-density maps using the sulfur anomalous signal alone at low resolution ( approximately 3.5 A). An interpretable electron-density map for each structure was obtained solely from the phases derived from single-wavelength anomalous dispersion (SAD) data obtained using Cr Kalpha radiation. Much fewer data (that is, lower redundancy) are required for this sulfur SAD phasing procedure compared with the highly redundant data reported in the sulfur SAD phasing procedure with Cu Kalpha radiation. Cr Kalpha radiation can also improve the strength of anomalous scattering of many other intrinsic elements in macromolecules, such as calcium, zinc and phosphorus, because of the increased Deltaf". Furthermore, the anomalous scattering of selenium is increased substantially from 1.14 e(-) with Cu Kalpha radiation to 2.28 e(-) with Cr Kalpha radiation. In order to measure the small Bijvoet differences accurately, several devices were developed for the experiment, including an Osmic Confocal MaxFlux optic optimized for Cr Kalpha radiation, a helium path and a beam stop. In the cases studied here, radiation damage to the samples and reduction of anomalous signal were observed in some long exposure time data sets. Therefore, an adequate data-collection strategy to maximize the completeness in a short scan range was used in subsequent data collections. The results show that the anomalous signal of S atoms can be collected quickly. Since the absorption of solvent and the loop may no longer be negligible with Cr Kalpha radiation, the orientation of the crystal and exposure time were taken into account in order to minimize the effects of radiation damage and absorption. This experimental study shows that using Cr Kalpha radiation from an in-house rotating-anode X-ray generator can provide sufficient phasing power from sulfur anomalous signals to routinely phase protein diffraction data.
软X射线辐射的反常散射为大分子晶体学的相位测定开辟了新的可能性。利用在内部铬辐射源(波长λ = 2.29 Å)上收集的S原子的反常散射对奇异果甜蛋白(22 kDa)和胰蛋白酶(24 kDa)晶体的X射线衍射数据进行相位测定。对于Cr Kα辐射,硫对反常项的贡献Δf" = 1.14 e⁻,相比Cu Kα辐射的Δf" = 0.56 e⁻ 增加了一倍。直接法程序RANTAN或SHELXD使用分辨率限制为3.5 Å的数据集成功找到了硫的位置。统计相位程序SHARP用于仅使用低分辨率(约3.5 Å)下的硫反常信号生成电子密度图。每个结构的可解释电子密度图仅从使用Cr Kα辐射获得的单波长反常色散(SAD)数据导出的相位中获得。与使用Cu Kα辐射的硫SAD相位测定程序中报告的高冗余数据相比,此硫SAD相位测定程序所需的数据要少得多(即冗余度更低)。由于Δf" 的增加,Cr Kα辐射还可以提高大分子中许多其他固有元素(如钙、锌和磷)的反常散射强度。此外,硒的反常散射从Cu Kα辐射时的1.14 e⁻大幅增加到Cr Kα辐射时的2.28 e⁻。为了准确测量小的Bijvoet差值,为该实验开发了几种装置,包括针对Cr Kα辐射优化的Osmic共焦MaxFlux光学元件、氦气路径和光束阻挡器。在这里研究的案例中,在一些长时间曝光的数据集里观察到了样品的辐射损伤和反常信号的减弱。因此,在后续的数据收集中采用了适当的数据收集策略,以在短扫描范围内最大化完整性。结果表明,可以快速收集S原子的反常信号。由于使用Cr Kα辐射时溶剂和环的吸收可能不再可忽略不计,因此考虑了晶体的取向和曝光时间,以尽量减少辐射损伤和吸收的影响。这项实验研究表明,使用来自内部旋转阳极X射线发生器的Cr Kα辐射可以从硫反常信号中提供足够的相位测定能力,以常规方式对蛋白质衍射数据进行相位测定。