Blüthgen Nils, Herzel Hanspeter
Institute for Theoretical Biology, Humboldt University, Invalidenstrasse 43, D-10115 Berlin, Germany.
J Theor Biol. 2003 Dec 7;225(3):293-300. doi: 10.1016/s0022-5193(03)00247-9.
Since all-or-none decisions of the cell are controlled by extracellular signals, cells have biochemical switches within their intracellular signaling networks. Central elements of these switches are multisite phosphorylation, enzymic saturation, and amplification by cascades. Moreover, positive feedback can contribute to switch-like behavior termed also ultrasensitivity. Here we analyse the robustness of these mechanisms exemplified by models of the three-molecule MAPK-cascade and the single-molecule Goldbeter-Koshland switch. We show that the ultrasensitivity in the MAPK-cascades is more robust against changes of the kinetic parameters than the Goldbeter-Koshland switch. If multiple parameters are changed randomly, the effects of parameter changes can compensate each other in the cascade leading to a remarkable robustness of the switch-like behavior. The different degrees of robustness can be traced back to the different mechanisms of generating ultrasensitivity. While in the Goldbeter-Koshland switch the saturation of the enzymes are crucial, in the MAPK-cascade the adjustment of working ranges determines the ultrasensitivity. Our results indicate that amplification of ultrasensitivity in cascades and multisite phosphorylation might be a design principle to achieve robust switches.
由于细胞的全或无决策由细胞外信号控制,细胞在其细胞内信号网络中具有生化开关。这些开关的核心要素是多位点磷酸化、酶饱和以及级联放大。此外,正反馈可导致类似开关的行为,也称为超敏感性。在此,我们以三分子丝裂原活化蛋白激酶(MAPK)级联模型和单分子戈德贝特-科什兰德(Goldbeter-Koshland)开关模型为例,分析这些机制的稳健性。我们表明,MAPK级联中的超敏感性比戈德贝特-科什兰德开关对动力学参数变化更具稳健性。如果多个参数随机变化,级联中参数变化的影响可以相互补偿,从而导致类似开关行为具有显著的稳健性。不同程度的稳健性可追溯到产生超敏感性的不同机制。在戈德贝特-科什兰德开关中,酶的饱和至关重要,而在MAPK级联中,工作范围的调整决定了超敏感性。我们的结果表明,级联中对超敏感性的放大和多位点磷酸化可能是实现稳健开关的一种设计原则。