Suppr超能文献

LIFEdb:一个用于功能基因组学实验的数据库,整合来自外部来源的信息,并作为一个样本跟踪系统。

LIFEdb: a database for functional genomics experiments integrating information from external sources, and serving as a sample tracking system.

作者信息

Bannasch Detlev, Mehrle Alexander, Glatting Karl-Heinz, Pepperkok Rainer, Poustka Annemarie, Wiemann Stefan

机构信息

German Cancer Research Center (DKFZ), Division of Molecular Genome Analysis, Im Neuenheimer Feld 580, D-69120 Heidelberg, Germany.

出版信息

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D505-8. doi: 10.1093/nar/gkh022.

Abstract

We have implemented LIFEdb (http://www.dkfz.de/LIFEdb) to link information regarding novel human full-length cDNAs generated and sequenced by the German cDNA Consortium with functional information on the encoded proteins produced in functional genomics and proteomics approaches. The database also serves as a sample-tracking system to manage the process from cDNA to experimental read-out and data interpretation. A web interface enables the scientific community to explore and visualize features of the annotated cDNAs and ORFs combined with experimental results, and thus helps to unravel new features of proteins with as yet unknown functions.

相似文献

2
The LIFEdb database in 2006.
Nucleic Acids Res. 2006 Jan 1;34(Database issue):D415-8. doi: 10.1093/nar/gkj139.
3
ORFDB: an information resource linking scientific content to a high-quality Open Reading Frame (ORF) collection.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D595-9. doi: 10.1093/nar/gkh118.
4
High-throughput protein analysis integrating bioinformatics and experimental assays.
Nucleic Acids Res. 2004 Feb 3;32(2):742-8. doi: 10.1093/nar/gkh257. Print 2004.
5
HUGE: a database for human KIAA proteins, a 2004 update integrating HUGEppi and ROUGE.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D502-4. doi: 10.1093/nar/gkh035.
6
From ORFeome to biology: a functional genomics pipeline.
Genome Res. 2004 Oct;14(10B):2136-44. doi: 10.1101/gr.2576704.
7
BrainProfileDB - a platform for integration of functional genomics data.
Proteomics. 2008 Mar;8(6):1162-4. doi: 10.1002/pmic.200700743.
9
An object model and database for functional genomics.
Bioinformatics. 2004 Jul 10;20(10):1583-90. doi: 10.1093/bioinformatics/bth130. Epub 2004 May 14.

引用本文的文献

1
A review from biological mapping to computation-based subcellular localization.
Mol Ther Nucleic Acids. 2023 Apr 20;32:507-521. doi: 10.1016/j.omtn.2023.04.015. eCollection 2023 Jun 13.
2
TMEM98 is a negative regulator of FRAT mediated Wnt/ß-catenin signalling.
PLoS One. 2020 Jan 21;15(1):e0227435. doi: 10.1371/journal.pone.0227435. eCollection 2020.
3
Defective nuclear import of Tpr in Progeria reflects the Ran sensitivity of large cargo transport.
J Cell Biol. 2013 May 13;201(4):541-57. doi: 10.1083/jcb.201212117. Epub 2013 May 6.
4
Novel roles of Vmp1: inhibition metastasis and proliferation of hepatocellular carcinoma.
Cancer Sci. 2012 Dec;103(12):2110-9. doi: 10.1111/cas.12025. Epub 2012 Oct 30.
5
Intracellular localization of GASP/ECOP/VOPP1.
J Mol Histol. 2010 Apr;41(2-3):153-64. doi: 10.1007/s10735-010-9272-8. Epub 2010 Jun 23.
6
Automated production of recombinant human proteins as resource for proteome research.
Proteome Sci. 2008 Jan 28;6:4. doi: 10.1186/1477-5956-6-4.
7
Towards defining the nuclear proteome.
Genome Biol. 2008 Jan 23;9(1):R15. doi: 10.1186/gb-2008-9-1-r15.
8
LOCATE: a mammalian protein subcellular localization database.
Nucleic Acids Res. 2008 Jan;36(Database issue):D230-3. doi: 10.1093/nar/gkm950. Epub 2007 Nov 5.
9
ProtSweep, 2Dsweep and DomainSweep: protein analysis suite at DKFZ.
Nucleic Acids Res. 2007 Jul;35(Web Server issue):W444-50. doi: 10.1093/nar/gkm364. Epub 2007 May 25.
10
Fast automated cell phenotype image classification.
BMC Bioinformatics. 2007 Mar 30;8:110. doi: 10.1186/1471-2105-8-110.

本文引用的文献

1
A task framework for the web interface W2H.
Bioinformatics. 2003 Jan 22;19(2):278-82. doi: 10.1093/bioinformatics/19.2.278.
2
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003.
Nucleic Acids Res. 2003 Jan 1;31(1):365-70. doi: 10.1093/nar/gkg095.
4
5
The UCSC Genome Browser Database.
Nucleic Acids Res. 2003 Jan 1;31(1):51-4. doi: 10.1093/nar/gkg129.
6
Ensembl 2002: accommodating comparative genomics.
Nucleic Acids Res. 2003 Jan 1;31(1):38-42. doi: 10.1093/nar/gkg083.
7
PROSITE: a documented database using patterns and profiles as motif descriptors.
Brief Bioinform. 2002 Sep;3(3):265-74. doi: 10.1093/bib/3.3.265.
8
YPL.db: the Yeast Protein Localization database.
Nucleic Acids Res. 2002 Jan 1;30(1):80-3. doi: 10.1093/nar/30.1.80.
9
The EMBL Nucleotide Sequence Database.
Nucleic Acids Res. 2002 Jan 1;30(1):21-6. doi: 10.1093/nar/30.1.21.
10
Being in the right location at the right time.
Genome Biol. 2001;2(9):REVIEWS1024. doi: 10.1186/gb-2001-2-9-reviews1024. Epub 2001 Aug 29.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验