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天蓝色链霉菌A3(2)中γ-丁内酯自调控受体蛋白的晶体结构

Crystal structure of a gamma-butyrolactone autoregulator receptor protein in Streptomyces coelicolor A3(2).

作者信息

Natsume Ryo, Ohnishi Yasuo, Senda Toshiya, Horinouchi Sueharu

机构信息

Department of Biotechnology, Graduate School of Agriculture and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, 113-8657, Tokyo, Japan.

出版信息

J Mol Biol. 2004 Feb 13;336(2):409-19. doi: 10.1016/j.jmb.2003.12.040.

Abstract

The gamma-butyrolactone-type autoregulator/receptor systems in the Gram-positive bacterial genus Streptomyces regulate morphological differentiation or antibiotic production, or both. The autoregulator receptors act as DNA-binding proteins, and on binding their cognate ligands (gamma-butyrolactones) they are released from the DNA, thus serving as repressors. The crystal structure of CprB in Streptomyces coelicolor A3(2), a homologue of the A-factor-receptor protein, ArpA, in Streptomyces griseus, was determined. The overall structure of CprB shows that the gamma-butyrolactone receptors belong to the TetR family. CprB is composed of two domains, a DNA-binding domain and a regulatory domain. The regulatory domain contains a hydrophobic cavity, which probably serves as a ligand-binding pocket. On the basis of the crystal structure of CprB and on the analogy of the characteristics of ligand-TetR binding, the binding of gamma-butyrolactones to the regulatory domain of the receptors is supposed to induce the relocation of the DNA-binding domain through conformational changes of residues located between the ligand-binding site and the DNA-binding domain, which would result in the dissociation of the receptors from their target DNA.

摘要

革兰氏阳性细菌链霉菌属中的γ-丁内酯型自动调节因子/受体系统可调节形态分化或抗生素产生,或两者皆有。自动调节因子受体作为DNA结合蛋白,在结合其同源配体(γ-丁内酯)后会从DNA上释放,从而起到阻遏物的作用。测定了天蓝色链霉菌A3(2)中CprB的晶体结构,它是灰色链霉菌中A因子受体蛋白ArpA的同源物。CprB的整体结构表明γ-丁内酯受体属于TetR家族。CprB由两个结构域组成,一个DNA结合结构域和一个调节结构域。调节结构域包含一个疏水腔,可能作为配体结合口袋。基于CprB的晶体结构以及配体与TetR结合特性的类比,推测γ-丁内酯与受体调节结构域的结合会通过位于配体结合位点和DNA结合结构域之间的残基构象变化诱导DNA结合结构域重新定位,这将导致受体与其靶DNA解离。

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