Natsume Ryo, Ohnishi Yasuo, Senda Toshiya, Horinouchi Sueharu
Department of Biotechnology, Graduate School of Agriculture and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, 113-8657, Tokyo, Japan.
J Mol Biol. 2004 Feb 13;336(2):409-19. doi: 10.1016/j.jmb.2003.12.040.
The gamma-butyrolactone-type autoregulator/receptor systems in the Gram-positive bacterial genus Streptomyces regulate morphological differentiation or antibiotic production, or both. The autoregulator receptors act as DNA-binding proteins, and on binding their cognate ligands (gamma-butyrolactones) they are released from the DNA, thus serving as repressors. The crystal structure of CprB in Streptomyces coelicolor A3(2), a homologue of the A-factor-receptor protein, ArpA, in Streptomyces griseus, was determined. The overall structure of CprB shows that the gamma-butyrolactone receptors belong to the TetR family. CprB is composed of two domains, a DNA-binding domain and a regulatory domain. The regulatory domain contains a hydrophobic cavity, which probably serves as a ligand-binding pocket. On the basis of the crystal structure of CprB and on the analogy of the characteristics of ligand-TetR binding, the binding of gamma-butyrolactones to the regulatory domain of the receptors is supposed to induce the relocation of the DNA-binding domain through conformational changes of residues located between the ligand-binding site and the DNA-binding domain, which would result in the dissociation of the receptors from their target DNA.
革兰氏阳性细菌链霉菌属中的γ-丁内酯型自动调节因子/受体系统可调节形态分化或抗生素产生,或两者皆有。自动调节因子受体作为DNA结合蛋白,在结合其同源配体(γ-丁内酯)后会从DNA上释放,从而起到阻遏物的作用。测定了天蓝色链霉菌A3(2)中CprB的晶体结构,它是灰色链霉菌中A因子受体蛋白ArpA的同源物。CprB的整体结构表明γ-丁内酯受体属于TetR家族。CprB由两个结构域组成,一个DNA结合结构域和一个调节结构域。调节结构域包含一个疏水腔,可能作为配体结合口袋。基于CprB的晶体结构以及配体与TetR结合特性的类比,推测γ-丁内酯与受体调节结构域的结合会通过位于配体结合位点和DNA结合结构域之间的残基构象变化诱导DNA结合结构域重新定位,这将导致受体与其靶DNA解离。