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一种简化型β-内酰胺酶的折叠

Folding of an abridged beta-lactamase.

作者信息

Santos Javier, Gebhard Leopoldo G, Risso Valeria A, Ferreyra Raul G, Rossi Juan P F C, Ermácora Mario R

机构信息

Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Roque Sáenz Peña 180, (1876) Bernal, Buenos Aires, Argentina.

出版信息

Biochemistry. 2004 Feb 17;43(6):1715-23. doi: 10.1021/bi0358162.

Abstract

The effects of C-terminal truncation on the equilibrium folding transitions and folding kinetics of B. licheniformis exo small beta-lactamase (ES-betaL) have been measured. ES-betaL lacking 19 residues (ES-betaL(C)(Delta)(19)) has no enzymic activity. Deletion of the last 14 residues produces ES-betaL(C)(Delta)(14), which is 0.1% active. The enzyme lacking nine residues (ES-betaL(C)(Delta)(9)) is nearly fully active, has native optical and hydrodynamic properties, and is protease resistant, a distinguishing feature of the wild-type enzyme. Although ES-betaL(C)(Delta)(9) folds properly, it does so 4 orders of magnitude slower than ES-betaL, making possible the isolation and characterization of a compact intermediate state (I(P) ES-betaL(C)(Delta)(9)). Based on the analysis of folding rates and equilibrium constants, we propose that equilibrium between I(P) ES-betaL(C)(Delta)(9) and other intermediate slow folding. Residues removed in ES-betaL(C)(Delta)(9) and ES-betaL(C)(Delta)(14) are helical and firmly integrated into the enzyme body through many van der Waals interactions involving residues distant in sequence. The results suggest that the deleted residues play a key role in the folding process and also the existence of a modular organization of the protein matrix, at the subdomain level. The results are compared with other examples of this kind in the folding literature.

摘要

已测定了C末端截短对地衣芽孢杆菌外切小β-内酰胺酶(ES-βL)平衡折叠转变和折叠动力学的影响。缺失19个残基的ES-βL(ES-βL(C)(Δ)(19))没有酶活性。缺失最后14个残基产生ES-βL(C)(Δ)(14),其活性为0.1%。缺失9个残基的酶(ES-βL(C)(Δ)(9))几乎完全有活性,具有天然的光学和流体动力学性质,并且对蛋白酶有抗性,这是野生型酶的一个显著特征。尽管ES-βL(C)(Δ)(9)能正确折叠,但其折叠速度比ES-βL慢4个数量级,这使得分离和表征一个紧密的中间态(I(P) ES-βL(C)(Δ)(9))成为可能。基于对折叠速率和平衡常数的分析,我们提出I(P) ES-βL(C)(Δ)(9)与其他中间态之间的平衡折叠缓慢。在ES-βL(C)(Δ)(9)和ES-βL(C)(Δ)(14)中去除的残基是螺旋状的,并通过许多涉及序列上相距较远残基的范德华相互作用牢固地整合到酶体中。结果表明,缺失的残基在折叠过程中起关键作用,并且在亚结构域水平上蛋白质基质存在模块化组织。将这些结果与折叠文献中此类的其他例子进行了比较。

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