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三链DNA结构;这是DNA同源识别的秘密吗?

Three-stranded DNA structure; is this the secret of DNA homologous recognition?

作者信息

Stasiak A

机构信息

Laboratoire d'Analyse Ultrastructurale, Université de Lausanne, Bâtiment de Biologie, Switzerland.

出版信息

Mol Microbiol. 1992 Nov;6(22):3267-76. doi: 10.1111/j.1365-2958.1992.tb02194.x.

DOI:10.1111/j.1365-2958.1992.tb02194.x
PMID:1484482
Abstract

A novel type of triple-stranded DNA structure was proposed by several groups to play a crucial role in homologous recognition between single- and double-stranded DNA molecules. In this still putative structure a duplex DNA was proposed to co-ordinate a homologous single strand in its major groove side. In contrast to the well-characterized pyrimidine-purine-pyrimidine triplexes in which the two like strands are antiparallel and which are restricted to poly-pyrimidine-containing stretches, the homology-specific triplexes would have like strands in parallel orientation and would not be restricted to any particular sequence provided that there is a homology between interacting DNA molecules. For many years the stereo-chemical possibility of forming homology-dependent three- or four-stranded DNA structures during the pairing stage of recombination reactions was seriously considered in published papers. However, only recently has there been a marked increase in the number of papers that have directly tested the formation of triple-stranded DNA structures during the actual pairing stage of the recombination reaction. Unfortunately the results of these tests are not totally clear cut; while some laboratories presented experimental evidence consistent with the formation of triplexes, others studying the same or very similar systems offered alternative explanations. The aim of this review is to present the current state of the central question in the mechanism of homologous recombination, namely, what kind of DNA structure is responsible for DNA homologous recognition. Is it a novel triplex structure or just a classical duplex?

摘要

几个研究小组提出了一种新型的三链DNA结构,认为它在单链和双链DNA分子之间的同源识别中起关键作用。在这种仍为假定的结构中,双链DNA被认为在其大沟侧协调一条同源单链。与特征明确的嘧啶-嘌呤-嘧啶三链体不同,其中两条相同的链是反平行的,并且仅限于含多嘧啶的片段,同源特异性三链体的相同链将呈平行排列,并且只要相互作用的DNA分子之间存在同源性,就不会局限于任何特定序列。多年来,在已发表的论文中,人们一直认真考虑在重组反应的配对阶段形成同源依赖性三链或四链DNA结构的立体化学可能性。然而,直到最近,直接测试重组反应实际配对阶段三链DNA结构形成的论文数量才显著增加。不幸的是,这些测试结果并不完全明确;虽然一些实验室提供了与三链体形成一致的实验证据,但其他研究相同或非常相似系统的实验室则给出了不同的解释。本综述的目的是介绍同源重组机制核心问题的当前状态,即什么样的DNA结构负责DNA同源识别。是一种新型的三链结构还是仅仅是经典的双链结构?

相似文献

1
Three-stranded DNA structure; is this the secret of DNA homologous recognition?三链DNA结构;这是DNA同源识别的秘密吗?
Mol Microbiol. 1992 Nov;6(22):3267-76. doi: 10.1111/j.1365-2958.1992.tb02194.x.
2
A parallel DNA triplex as a model for the intermediate in homologous recombination.作为同源重组中间体模型的平行DNA三链体
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EMBO J. 2003 Jan 15;22(2):324-34. doi: 10.1093/emboj/cdg027.
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Pairing of homologous DNA sequences by proteins: evidence for three-stranded DNA.蛋白质介导的同源DNA序列配对:三链DNA的证据
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Radioprobing of a RecA-three-stranded DNA complex with iodine 125: evidence for recognition of homology in the major groove of the target duplex.用碘125对RecA三链DNA复合物进行放射性探测:靶双链体大沟中同源性识别的证据。
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Homologous recognition promoted by RecA protein via non-Watson-Crick bonds between identical DNA strands.RecA蛋白通过相同DNA链之间的非沃森-克里克键促进同源识别。
Proc Natl Acad Sci U S A. 1993 Jul 15;90(14):6646-50. doi: 10.1073/pnas.90.14.6646.
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Probing the structure of a putative intermediate in homologous recombination: the third strand in the parallel DNA triplex is in contact with the major groove of the duplex.探究同源重组中假定中间体的结构:平行DNA三链体中的第三条链与双链体的大沟接触。
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A Mechanism for RecA-Promoted Sequence Homology Recognition and Strand Exchange Between Single-Stranded DNA and Duplex DNA, via Triple-Helical Intermediates.一种通过三螺旋中间体实现RecA促进的单链DNA与双链DNA之间序列同源性识别和链交换的机制。
J Biomol Struct Dyn. 2000;17 Suppl 1:147-53. doi: 10.1080/07391102.2000.10506615.
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Stable three-stranded DNA made by RecA protein.由RecA蛋白形成的稳定三链DNA。
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A molecular model for RecA-promoted strand exchange via parallel triple-stranded helices.一种通过平行三链螺旋进行RecA促进的链交换的分子模型。
Biophys J. 1999 Sep;77(3):1562-76. doi: 10.1016/S0006-3495(99)77004-9.

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Unwinding of the third strand of a DNA triple helix, a novel activity of the SV40 large T-antigen helicase.解开DNA三链螺旋的第三条链,这是SV40大T抗原解旋酶的一种新活性。
Nucleic Acids Res. 1996 Jan 15;24(2):330-5. doi: 10.1093/nar/24.2.330.
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