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蛋白质单体-二聚体平衡中配体诱导的单体化和二聚化的数学分析。应用于D-氨基酸氧化酶。

Mathematical analysis of ligand-induced monomerization and dimerization in the monomer dimer equilibrium of proteins. Application to D-amino acid oxidase.

作者信息

Horiike K, Shiga K, Isomoto A, Yamano T

出版信息

J Biochem. 1977 Jan;81(1):179-86. doi: 10.1093/oxfordjournals.jbchem.a131433.

DOI:10.1093/oxfordjournals.jbchem.a131433
PMID:14929
Abstract

We have mathematically analyzed ligand-induced monomerization and dimerization in a protein monomer-dimer equilibrium system, in which the monomer has one and the dimer two binding sites. These dimer sites have the same binding constants for the first ligand but may cooperatively interact when one of them is occupied by a ligand molecule. In this system, the apparent dimerization constant and the apparent molecular weight are functions of free ligand concentration, and depend on the intrinsic binding constants of the ligand molecule to the monomer and the dimer. The behavior of these functions is classified into 17 cases according to the values of the three intrinsic binding constants, and some calculated examples are shown graphically for selected parameters. The theory was also applied to D-amino acid oxidase [EC 1.4.3.3], a flavoprotein, and the pH dependence of the apparent dimerization constant and the apparent molecular weight in the presence of ligand, p-aminobenzoate, were studied theoretically using parameters obtained in our previous experiments (5).

摘要

我们对蛋白质单体 - 二聚体平衡系统中配体诱导的单体化和二聚化进行了数学分析,其中单体有一个结合位点,二聚体有两个结合位点。这些二聚体位点对第一个配体具有相同的结合常数,但当其中一个被配体分子占据时可能会协同相互作用。在这个系统中,表观二聚化常数和表观分子量是游离配体浓度的函数,并且取决于配体分子与单体和二聚体的固有结合常数。根据三个固有结合常数的值,这些函数的行为被分为17种情况,并针对选定的参数以图形方式展示了一些计算示例。该理论还应用于黄素蛋白D - 氨基酸氧化酶[EC 1.4.3.3],并使用我们之前实验(5)中获得的参数从理论上研究了在配体对氨基苯甲酸存在下表观二聚化常数和表观分子量对pH的依赖性。

相似文献

1
Mathematical analysis of ligand-induced monomerization and dimerization in the monomer dimer equilibrium of proteins. Application to D-amino acid oxidase.蛋白质单体-二聚体平衡中配体诱导的单体化和二聚化的数学分析。应用于D-氨基酸氧化酶。
J Biochem. 1977 Jan;81(1):179-86. doi: 10.1093/oxfordjournals.jbchem.a131433.
2
Interaction between D-amino acid oxidase and small molecules.D-氨基酸氧化酶与小分子之间的相互作用。
J Biochem. 1976 Nov;80(5):1073-83. doi: 10.1093/oxfordjournals.jbchem.a131363.
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Association-dissociation of the flavoprotein hog kidney D-amino acid oxidase. Determination of the monomer-dimer equilibrium constant and the energetics of subunit association.黄素蛋白猪肾D-氨基酸氧化酶的缔合-解离。单体-二聚体平衡常数的测定及亚基缔合的能量学研究。
J Biochem. 1977 Nov;82(5):1247-55. doi: 10.1093/oxfordjournals.jbchem.a131812.
4
Structure and function of D-amino acid oxidase. IX. Changes in the fluorescence polarization of FAD upon complex formation.D-氨基酸氧化酶的结构与功能。IX. 复合物形成时黄素腺嘌呤二核苷酸荧光偏振的变化。
J Biochem. 1975 Feb;77(2):463-8. doi: 10.1093/oxfordjournals.jbchem.a130746.
5
Self-association mode of a flavoenzyme D-amino acid oxidase from hog kidney. II. Stoichiometry of holoenzyme association and energetics of subunit association.猪肾黄素酶D-氨基酸氧化酶的自缔合模式。II. 全酶缔合的化学计量和亚基缔合的能量学
J Biol Chem. 1985 Oct 15;260(23):12615-21.
6
Effect of pH on the interaction of benzoate and D-amino acid oxidase.pH对苯甲酸盐与D-氨基酸氧化酶相互作用的影响。
Biochemistry. 1977 Jul 26;16(15):3348-54. doi: 10.1021/bi00634a010.
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Kinetic and equilibrium studies on the interaction of reduced flavoprotein D-amino acid oxidase with pyridine carboxylates.还原型黄素蛋白D-氨基酸氧化酶与吡啶羧酸盐相互作用的动力学及平衡研究
J Biochem. 1987 Aug;102(2):327-32. doi: 10.1093/oxfordjournals.jbchem.a122058.
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The functional difference between the monomer and the dimer of D-amino acid oxidase.D-氨基酸氧化酶单体与二聚体之间的功能差异。
Arch Biochem Biophys. 1971 Aug;145(2):701-2. doi: 10.1016/s0003-9861(71)80031-0.
9
A study of the interaction between D-amino acid oxidase and quasi-substrates.D-氨基酸氧化酶与准底物之间相互作用的研究。
J Biochem. 1976 Nov;80(5):1101-8. doi: 10.1093/oxfordjournals.jbchem.a131366.
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Self-association mode of a flavoenzyme D-amino acid oxidase from hog kidney. I. Analysis of apparent weight-average molecular weight data for the apoenzyme in terms of models.猪肾黄素酶D-氨基酸氧化酶的自缔合模式。I. 根据模型分析脱辅基酶的表观重均分子量数据。
J Biol Chem. 1985 Oct 15;260(23):12607-14.

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