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人类9号染色体黏粒文库的构建与鉴定

Generation and characterization of a human chromosome 9 cosmid library.

作者信息

Graw S L, Buckler A J, Britt D E, Jackson C L, Taruscio D, Baldini A, Ward D C, Housman D E

机构信息

Department of Biology, Massachusetts Institute of Technology, Cambridge 02139.

出版信息

Somat Cell Mol Genet. 1992 May;18(3):269-84. doi: 10.1007/BF01233863.

DOI:10.1007/BF01233863
PMID:1496422
Abstract

A cosmid library has been constructed from the hamster-human hybrid cell line PK-87-9, which contains chromosome 9 as its sole known human component. Ten thousand colonies were produced, of which approximately 200, or 2%, contain human material. Fifty of these 200 were regionally mapped by an Alu-primed PCR product hybridization procedure. These cosmids were localized to all regions of chromosome 9, but were especially concentrated in the distal portion of 9q. The map location derived by the Alu-primed PCR product hybridization procedure was compared to the map location derived by fluorescent in situ hybridization. Assignment of chromosomal location by the two methods was correspondent in all but a few cases. The presumptive presence of HTF islands was investigated for 130 cosmids by digestion with the restriction enzyme NotI. Twenty percent of cosmids contained at least one NotI site. A number of simple sequence repeat polymorphisms identified from the cosmid set were characterized and will provide a link between the genetic and physical maps for this chromosome.

摘要

已从仓鼠 - 人杂交细胞系PK - 87 - 9构建了一个黏粒文库,该细胞系含有9号染色体作为其唯一已知的人类成分。产生了一万个菌落,其中约200个(即2%)含有人类物质。通过Alu引物PCR产物杂交程序对这200个中的50个进行了区域定位。这些黏粒定位于9号染色体的所有区域,但特别集中在9q的远端部分。将通过Alu引物PCR产物杂交程序得出的图谱位置与通过荧光原位杂交得出的图谱位置进行了比较。除少数情况外,两种方法对染色体位置的定位是一致的。通过用限制酶NotI消化,对130个黏粒的HTF岛的推测存在情况进行了研究。20%的黏粒含有至少一个NotI位点。从黏粒组中鉴定出的一些简单序列重复多态性进行了表征,它们将为该染色体的遗传图谱和物理图谱之间提供联系。

相似文献

1
Generation and characterization of a human chromosome 9 cosmid library.人类9号染色体黏粒文库的构建与鉴定
Somat Cell Mol Genet. 1992 May;18(3):269-84. doi: 10.1007/BF01233863.
2
Construction and characterization of radiation hybrids for chromosome 9, and their use in mapping cosmid probes on the chromosome.9号染色体辐射杂种的构建与鉴定及其在染色体上定位黏粒探针中的应用。
Somat Cell Mol Genet. 1992 May;18(3):285-301. doi: 10.1007/BF01233864.
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Characterization of two chromosome 12 cosmid libraries and development of STSs from cosmids mapped by FISH.两个12号染色体黏粒文库的特征分析以及通过荧光原位杂交定位的黏粒中序列标签位点的开发。
Genomics. 1993 Sep;17(3):682-93. doi: 10.1006/geno.1993.1390.
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Characterization of a human chromosome 4 flow-sorted cosmid library.
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Rapid isolation of cosmids from defined subregions by differential Alu-PCR hybridization on chromosome 22-specific library.通过对22号染色体特异性文库进行差异Alu-PCR杂交,从特定亚区域快速分离黏粒。
Genomics. 1992 Jun;13(2):395-401. doi: 10.1016/0888-7543(92)90259-u.
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Cosmid linking clones localized to the long arm of human chromosome 11.黏粒连接克隆定位于人类11号染色体长臂。
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Three new dinucleotide repeat polymorphisms on human chromosome 9: D9S970, D9S971, and D9S972.人类9号染色体上的三个新的二核苷酸重复多态性:D9S970、D9S971和D9S972。
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Isolation and mapping of cosmid markers on human chromosome 22, including one within the submicroscopically deleted region of DiGeorge syndrome.人类22号染色体上黏粒标记的分离与定位,包括一个位于迪格奥尔格综合征亚显微缺失区域内的标记。
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Isolation and regional localization of cosmid linking clones from human chromosome 12.来自人类12号染色体的黏粒连接克隆的分离与区域定位。
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引用本文的文献

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Oat-maize chromosome addition lines: a new system for mapping the maize genome.燕麦-玉米染色体附加系:一种用于玉米基因组图谱绘制的新系统。
Proc Natl Acad Sci U S A. 1997 Apr 15;94(8):3524-9. doi: 10.1073/pnas.94.8.3524.
2
An index marker map of chromosome 9 provides strong evidence for positive interference.9号染色体的索引标记图为正干涉提供了有力证据。
Am J Hum Genet. 1993 Dec;53(6):1279-88.
3
Efficient identification and regional positioning of YAC and cosmid clones to human chromosome 21 by radiation fusion hybrids.通过辐射杂种细胞将YAC和黏粒克隆高效鉴定并定位到人类21号染色体上。
Mamm Genome. 1994 Jun;5(6):365-71. doi: 10.1007/BF00356556.