Ozbudak Ertugrul M, Thattai Mukund, Lim Han N, Shraiman Boris I, Van Oudenaarden Alexander
Department of Physics, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA.
Nature. 2004 Feb 19;427(6976):737-40. doi: 10.1038/nature02298.
Multistability, the capacity to achieve multiple internal states in response to a single set of external inputs, is the defining characteristic of a switch. Biological switches are essential for the determination of cell fate in multicellular organisms, the regulation of cell-cycle oscillations during mitosis and the maintenance of epigenetic traits in microbes. The multistability of several natural and synthetic systems has been attributed to positive feedback loops in their regulatory networks. However, feedback alone does not guarantee multistability. The phase diagram of a multistable system, a concise description of internal states as key parameters are varied, reveals the conditions required to produce a functional switch. Here we present the phase diagram of the bistable lactose utilization network of Escherichia coli. We use this phase diagram, coupled with a mathematical model of the network, to quantitatively investigate processes such as sugar uptake and transcriptional regulation in vivo. We then show how the hysteretic response of the wild-type system can be converted to an ultrasensitive graded response. The phase diagram thus serves as a sensitive probe of molecular interactions and as a powerful tool for rational network design.
多稳态,即对单一组外部输入做出响应而实现多种内部状态的能力,是开关的决定性特征。生物开关对于多细胞生物中细胞命运的决定、有丝分裂期间细胞周期振荡的调节以及微生物中表观遗传特征的维持至关重要。几个天然和合成系统的多稳态已归因于其调节网络中的正反馈回路。然而,仅靠反馈并不能保证多稳态。多稳态系统的相图,即随着关键参数变化对内部状态的简洁描述,揭示了产生功能性开关所需的条件。在此,我们展示了大肠杆菌双稳态乳糖利用网络的相图。我们使用该相图,结合网络的数学模型,对体内糖摄取和转录调控等过程进行定量研究。然后我们展示了野生型系统的滞后响应如何能够转变为超敏感的分级响应。因此,相图可作为分子相互作用的灵敏探针以及用于合理网络设计的强大工具。