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溶剂对甘氨酸的影响II. 水辅助互变异构

Solvent effects on glycine II. Water-assisted tautomerization.

作者信息

Balta Bülent, Aviyente Viktorya

机构信息

Bogaziçi University, Chemistry Department 34342 Bebek/Istanbul, Turkey.

出版信息

J Comput Chem. 2004 Apr 15;25(5):690-703. doi: 10.1002/jcc.10422.

Abstract

The water-assisted tautomerization of glycine has been investigated at the B3LYP/6-31+G** level using supermolecules containing up to six water molecules as well as considering a 1:1 glycine-water complex embedded in a continuum. The conformations of the tautomers in this mechanism do not display an intramolecular H bond, instead the functional groups are bridged by a water molecule. The replacement of the intramolecular H bond by the bridging water reduces the polarity of the N-H bond in the zwitterion and increases that of the O-H bond in the neutral, stabilizing the zwitterion. Both the charge transfer effects and electrostatic interactions stabilize the nonintramolecularly H-bonded zwitterion conformer over the intramolecularly hydrogen bonded one. The nonintramolecularly H-bonded neutral is favored only by charge transfer effects. Although there is no strong evidence whether the intramolecularly hydrogen bonded or non hydrogen bonded structures are favored in the bulk solution represented as a dielectric continuum, it is likely that the latter species are more stable. The free energy of activation of the water-assisted mechanism is higher than the intramolecular proton transfer channel. However, when the presumably higher conformational energy of the zwitterion reacting in the intramolecular mechanism is taken into account, both mechanisms are observed to compete. The various conformers of the neutral glycine may form via multiple proton transfer reactions through several water molecules instead of a conformational rearrangement.

摘要

利用包含多达六个水分子的超分子,并考虑嵌入连续介质中的1:1甘氨酸 - 水络合物,在B3LYP/6 - 31 + G**水平上研究了甘氨酸的水辅助互变异构化。该机制中互变异构体的构象不显示分子内氢键,相反,官能团由一个水分子桥连。用桥连水分子取代分子内氢键会降低两性离子中N - H键的极性,并增加中性分子中O - H键的极性,从而使两性离子稳定。电荷转移效应和静电相互作用都使非分子内氢键结合的两性离子构象体比分子内氢键结合的构象体更稳定。非分子内氢键结合的中性分子仅受电荷转移效应的青睐。尽管没有强有力的证据表明在表示为介电连续介质的本体溶液中,分子内氢键结合或非氢键结合的结构更受青睐,但后者可能更稳定。水辅助机制的活化自由能高于分子内质子转移通道。然而,当考虑到在分子内机制中反应的两性离子可能具有更高的构象能时,观察到两种机制相互竞争。中性甘氨酸的各种构象体可能通过几个水分子的多次质子转移反应形成,而不是通过构象重排形成。

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