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半胱氨酸的微溶剂化:一项密度泛函理论研究。

Microsolvation of cysteine: a density functional theory study.

作者信息

Bachrach Steven M, Nguyen Thuy T, Demoin Dustin W

机构信息

Department of Chemistry, Trinity University, San Antonio, Texas 78212, USA.

出版信息

J Phys Chem A. 2009 May 28;113(21):6172-81. doi: 10.1021/jp901491p.

Abstract

Microsolvation of the neutral, zwitterion, and unconventional zwitterion (formed by the proton transfer from the thiol to the amine group) was performed using PBE1PBE/6-311+G(d,p) calculations. A large sampling of the configurations of the clusters involving one to six water molecules was created by analogy to glycine clusters and through analysis of hydrogen-bonding trends. Clusters of the neutral tautomer are lowest in energy with the inclusion up to five water molecules. With six water molecules the neutral and zwitterion are nearly isoenergetic. The unconventional zwitterion, while a stable structure when at least one water molecule is associated with it, remains energetically noncompetitive with the other two tautomers regardless of the degree of microsolvation.

摘要

使用PBE1PBE/6 - 311+G(d,p)计算方法对中性、两性离子和非常规两性离子(由硫醇向胺基的质子转移形成)进行微溶剂化研究。通过类比甘氨酸簇并分析氢键趋势,对包含一到六个水分子的簇的构型进行了大量采样。中性互变异构体的簇在包含多达五个水分子时能量最低。有六个水分子时,中性体和两性离子的能量几乎相等。非常规两性离子虽然在至少有一个水分子与其缔合时是一种稳定结构,但无论微溶剂化程度如何,其能量与其他两种互变异构体相比都不占优势。

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