He Ze, Stigers Lavoie Kimberly D, Bartlett Paul A, Toney Michael D
Department of Chemistry, University of California-Davis, Davis, California 95616, USA.
J Am Chem Soc. 2004 Mar 3;126(8):2378-85. doi: 10.1021/ja0389927.
Chorismate is the end-product of the shikimate pathway for biosynthesis of carbocyclic aromatic compounds in plants, bacteria, fungi, and some parasites. Anthranilate synthase (AS), 4-amino-4-deoxychorismate synthase (ADCS), and isochorismate synthase (IS) are homologous enzymes that carry out the initial transformations on chorismate in the biosynthesis of tryptophan, p-aminobenzoate, and enterobactin, respectively, and are expected to share a common mechanism. Poor binding to ADCS of two potential transition state analogues for addition of a nucleophile to C6 of chorismate implies that it, like AS and IS, initiates reaction by addition of a nucleophile to C2. Molecular modeling based on the X-ray structures of AS and ADCS suggests that the active site residue K274 is the nucleophile employed by ADCS to initiate the reaction, forming a covalent intermediate. The K274A and K274R mutants were shown to have 265- and 640-fold reduced k(cat) values when PabA (the cognate amidotransferase) + glutamine are used as the nitrogen source. Under conditions of saturating chorismate and NH(4)(+), ADCS and the K274A mutant have identical k(cat) values, suggesting the participation of NH(4)(+) as a rescue agent. Such participation was confirmed by the buildup of 2-amino-2-deoxyisochorismate in the reactions of the K274A mutant but not ADCS, when either NH(4)(+) or PabA + glutamine is used as the nitrogen source. Additionally, the inclusion of ethylamine in the reactions of K274A yields the N-ethyl derivative of 2-amino-2-deoxyisochorismate. A unifying mechanism for AS, ADCS, and IS entailing nucleophile addition to C2 of chorismate in an S(N)2' ' process is proposed.
分支酸是植物、细菌、真菌和一些寄生虫中用于合成碳环芳香化合物的莽草酸途径的终产物。邻氨基苯甲酸合酶(AS)、4-氨基-4-脱氧分支酸合酶(ADCS)和异分支酸合酶(IS)是同源酶,它们分别在色氨酸、对氨基苯甲酸和肠杆菌素的生物合成中对分支酸进行初始转化,并且预计具有共同的机制。两种潜在的过渡态类似物与ADCS结合不佳,这些类似物用于将亲核试剂添加到分支酸的C6位,这意味着它与AS和IS一样,通过将亲核试剂添加到C2位来引发反应。基于AS和ADCS的X射线结构的分子建模表明,活性位点残基K274是ADCS用于引发反应的亲核试剂,形成共价中间体。当使用PabA(同源酰胺转移酶)+谷氨酰胺作为氮源时,K274A和K274R突变体的催化常数(k(cat))值分别降低了265倍和640倍。在分支酸和NH4(+)饱和的条件下,ADCS和K274A突变体具有相同的k(cat)值,这表明NH4(+)作为救援剂参与其中。当使用NH4(+)或PabA +谷氨酰胺作为氮源时,K274A突变体而非ADCS的反应中2-氨基-2-脱氧异分支酸的积累证实了这种参与。此外,在K274A的反应中加入乙胺会产生2-氨基-2-脱氧异分支酸的N-乙基衍生物。提出了一种统一的机制,即AS、ADCS和IS在S(N)2' '过程中通过将亲核试剂添加到分支酸的C2位来发挥作用。