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生物磷酸转移模型。

Models for biological phosphoryl transfer.

作者信息

Williams Nicholas H

机构信息

Department of Chemistry, Centre for Chemical Biology, Krebs Institute for Biomolecular Science, University of Sheffield, Sheffield S3 7HF, UK.

出版信息

Biochim Biophys Acta. 2004 Mar 11;1697(1-2):279-87. doi: 10.1016/j.bbapap.2003.11.031.

DOI:10.1016/j.bbapap.2003.11.031
PMID:15023368
Abstract

Quantifying the rate of phosphate monoester dianion hydrolysis under physiological conditions has implications for designing transition state mimics and understanding how catalysis is facilitated. Catalysis is energetically most efficient if the mechanistic pathway in solution is stabilised. Monoesters are believed to have a "dissociative" transition state that has little bonding to the nucleophile and leaving group. However, in many instances, it is suggested that enzymes catalyse monoester transfer through an associative (diester-like) pathway. This is perhaps easier to rationalise in terms of the active site residues available. For example, in the catalytic subunit of protein phosphatase 1 (PP1), these are metal ions and cationic side chains which might be expected to stabilise developing negative charge. By using multiple interactions simultaneously, cooperativity in catalysis may be achieved. However, this idea is difficult to demonstrate unambiguously in large, complex natural systems. This contribution examines the background reactivity of phosphate esters, and reports data showing that the substrates for serine/threonine phosphatases have slower intrinsic rate constants than any other enzyme substrates. Using model complexes, the characteristics of alternative (associative) mechanisms that have been proposed for the metallophosphatase catalysed reaction are explored. Finally, complementary catalytic groups are combined with this core complex to look for experimental evidence for possible cooperativity in this context.

摘要

在生理条件下对磷酸单酯二价阴离子水解速率进行定量,对于设计过渡态模拟物以及理解催化作用的促进方式具有重要意义。如果溶液中的反应机理途径得到稳定,催化作用在能量上最为高效。单酯被认为具有“解离型”过渡态,与亲核试剂和离去基团的键合很少。然而,在许多情况下,有人提出酶通过缔合(类似二酯)途径催化单酯转移。从可用的活性位点残基角度来看,这或许更容易解释。例如,在蛋白磷酸酶1(PP1)的催化亚基中,这些是金属离子和阳离子侧链,预计它们能够稳定发展中的负电荷。通过同时利用多种相互作用,可以实现催化作用中的协同性。然而,在大型、复杂的天然系统中,这一观点很难得到明确证明。本文探讨了磷酸酯的背景反应性,并报告了数据,表明丝氨酸/苏氨酸磷酸酶的底物比任何其他酶底物的固有速率常数都要低。利用模型配合物,探索了为金属磷酸酶催化反应提出的替代(缔合)机制的特征。最后,将互补的催化基团与该核心配合物结合起来,寻找在这种情况下可能存在协同性的实验证据。

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