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协同增强子在果蝇基因组中具有共同的组织特征。

Coordinate enhancers share common organizational features in the Drosophila genome.

作者信息

Erives Albert, Levine Michael

机构信息

Center for Integrative Genomics, Department of Molecular and Cell Biology, Division of Genetics and Development, University of California, Berkeley, CA 94720, USA.

出版信息

Proc Natl Acad Sci U S A. 2004 Mar 16;101(11):3851-6. doi: 10.1073/pnas.0400611101.

DOI:10.1073/pnas.0400611101
PMID:15026577
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC374333/
Abstract

The evolution of animal diversity depends on changes in the regulation of a relatively fixed set of protein-coding genes. To understand how these changes might arise, we examined the organization of shared sequence motifs in four coordinately regulated neurogenic enhancers that direct similar patterns of gene expression in the early Drosophila embryo. All four enhancers possess similar arrangements of a subset of putative regulatory elements. These shared features were used to identify a neurogenic enhancer in the distantly related Anopheles genome. We suggest that the constrained organization of metazoan enhancers may be essential for their ability to produce precise patterns of gene expression during development. Organized binding sites should facilitate the identification of regulatory codes that link primary DNA sequence information with predicted patterns of gene activity.

摘要

动物多样性的进化取决于一组相对固定的蛋白质编码基因调控的变化。为了解这些变化是如何产生的,我们研究了四个协同调控的神经源性增强子中共享序列基序的组织情况,这些增强子在果蝇早期胚胎中指导相似的基因表达模式。所有四个增强子都具有一组推定调控元件的相似排列。这些共享特征被用于在远缘相关的按蚊基因组中鉴定一个神经源性增强子。我们认为后生动物增强子的受限组织对于它们在发育过程中产生精确基因表达模式的能力可能至关重要。有组织的结合位点应有助于识别将初级DNA序列信息与预测的基因活性模式联系起来的调控密码。

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本文引用的文献

1
A regulatory code for neurogenic gene expression in the Drosophila embryo.果蝇胚胎中神经源性基因表达的调控密码。
Development. 2004 May;131(10):2387-94. doi: 10.1242/dev.01124.
2
Immunity regulatory DNAs share common organizational features in Drosophila.免疫调节性DNA在果蝇中具有共同的组织特征。
Mol Cell. 2004 Jan 16;13(1):19-32. doi: 10.1016/s1097-2765(03)00500-8.
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A protein interaction map of Drosophila melanogaster.黑腹果蝇的蛋白质相互作用图谱。
Science. 2003 Dec 5;302(5651):1727-36. doi: 10.1126/science.1090289. Epub 2003 Nov 6.
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Target Explorer: An automated tool for the identification of new target genes for a specified set of transcription factors.靶标探索器:一种用于识别特定转录因子组新靶基因的自动化工具。
Nucleic Acids Res. 2003 Jul 1;31(13):3589-92. doi: 10.1093/nar/gkg544.
5
The Drosophila IgC2 domain protein Friend-of-Echinoid, a paralogue of Echinoid, limits the number of sensory organ precursors in the wing disc and interacts with the Notch signaling pathway.果蝇免疫球蛋白C2结构域蛋白类海胆之友(Echinoid的旁系同源物)限制了翅芽中感觉器官前体细胞的数量,并与Notch信号通路相互作用。
Dev Biol. 2003 Apr 15;256(2):302-16. doi: 10.1016/s0012-1606(03)00038-1.
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Whole-genome analysis of dorsal-ventral patterning in the Drosophila embryo.果蝇胚胎背腹模式形成的全基因组分析。
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The MADF-BESS domain factor Dip3 potentiates synergistic activation by Dorsal and Twist.MADF-BESS结构域因子Dip3增强了背侧蛋白和扭曲蛋白的协同激活作用。
Gene. 2002 Oct 16;299(1-2):173-84. doi: 10.1016/s0378-1119(02)01058-2.
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Dorsal gradient networks in the Drosophila embryo.果蝇胚胎中的背侧梯度网络。
Dev Biol. 2002 Jun 1;246(1):57-67. doi: 10.1006/dbio.2002.0652.
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Promoter-specific functions of CIITA and the MHC class II enhanceosome in transcriptional activation.CIITA和MHC II类增强体在转录激活中的启动子特异性功能。
EMBO J. 2002 Mar 15;21(6):1379-88. doi: 10.1093/emboj/21.6.1379.
10
Genome-wide analysis of clustered Dorsal binding sites identifies putative target genes in the Drosophila embryo.对成簇的背侧结合位点进行全基因组分析,可确定果蝇胚胎中的假定靶基因。
Proc Natl Acad Sci U S A. 2002 Jan 22;99(2):763-8. doi: 10.1073/pnas.012591199. Epub 2001 Dec 18.