Ryu Kyoung-Seok, Kim Changhoon, Kim Insook, Yoo Seokho, Choi Byong-Seok, Park Chankyu
Yusong-Gu, Gusong-Dong 373-1, Department of Chemistry, Korea Advanced Institute of Science and Technology, Daejon, Korea.
J Biol Chem. 2004 Jun 11;279(24):25544-8. doi: 10.1074/jbc.M402016200. Epub 2004 Apr 1.
By exploiting nuclear magnetic resonance (NMR) techniques along with novel applications of saturation difference analysis, we deciphered the functions of the previously uncharacterized products of three bacterial genes, rbsD, fucU, and yiiL, which are part of the ribose, fucose, and rhamnose operons of Escherichia coli, respectively. We show that RbsD catalyzes the pyran to furan conversion of ribose, whereas FucU and YiiL are involved in the catalysis of the anomeric conversion of their respective sugars. It was observed that the anomeric exchange of only ribofuranose, not ribopyranose, occurs spontaneously in solution rationalizing its evolutionary incorporation into the nucleic acid. The RbsD and FucU proteins share sequence homology and belong to the same protein family that is found from eubacteria to human, whereas the YiiL homologues exist in archaebacteria and lower eukaryotes. These enzymes, including the galactose mutarotase, exhibit a certain degree of cross-specificity to structurally analogous sugars thereby encompassing all existing monosaccharides in terms of their reactivities. The ubiquitous presence of enzymes involved in the anomeric changes of monosaccharides highlights an importance of these activities in various cellular processes requiring efficient monosaccharide utilization.
通过利用核磁共振(NMR)技术以及饱和差异分析的新应用,我们解析了三种细菌基因rbsD、fucU和yiiL先前未被表征的产物的功能,它们分别是大肠杆菌核糖、岩藻糖和鼠李糖操纵子的一部分。我们表明,RbsD催化核糖的吡喃型到呋喃型转化,而FucU和YiiL参与各自糖类的异头物转化催化。据观察,只有呋喃核糖而非吡喃核糖的异头物交换在溶液中自发发生,这解释了其在进化过程中被纳入核酸的原因。RbsD和FucU蛋白具有序列同源性,属于从真细菌到人类都存在的同一蛋白家族,而YiiL同源物存在于古细菌和低等真核生物中。这些酶,包括半乳糖变旋酶,对结构类似的糖类表现出一定程度的交叉特异性,从而在反应性方面涵盖了所有现有的单糖。参与单糖异头物变化的酶的普遍存在突出了这些活性在需要高效利用单糖的各种细胞过程中的重要性。