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利用平衡时交换光谱的动力学分析发现并表征磺基奎诺糖差向异构酶。

Discovery and characterization of a sulfoquinovose mutarotase using kinetic analysis at equilibrium by exchange spectroscopy.

机构信息

School of Chemistry, University of Melbourne, Parkville, VIC 3010, Australia.

Bio21 Molecular Science and Biotechnology Institute, University of Melbourne, Parkville, VIC 3010, Australia.

出版信息

Biochem J. 2018 Apr 16;475(7):1371-1383. doi: 10.1042/BCJ20170947.

DOI:10.1042/BCJ20170947
PMID:29535276
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5902678/
Abstract

Bacterial sulfoglycolytic pathways catabolize sulfoquinovose (SQ), or glycosides thereof, to generate a three-carbon metabolite for primary cellular metabolism and a three-carbon sulfonate that is expelled from the cell. Sulfoglycolytic operons encoding an Embden-Meyerhof-Parnas-like or Entner-Doudoroff (ED)-like pathway harbor an uncharacterized gene ( in ; in ) that is up-regulated in the presence of SQ, has been annotated as an aldose-1-epimerase and which may encode an SQ mutarotase. Our sequence analyses and structural modeling confirmed that these proteins possess mutarotase-like active sites with conserved catalytic residues. We overexpressed the homolog from the sulfo-ED operon of (SQM) and used it to demonstrate SQ mutarotase activity for the first time. This was accomplished using nuclear magnetic resonance exchange spectroscopy, a method that allows the chemical exchange of magnetization between the two SQ anomers at equilibrium. SQM also catalyzed the mutarotation of various aldohexoses with an equatorial 2-hydroxy group, including d-galactose, d-glucose, d-glucose-6-phosphate (Glc-6-P), and d-glucuronic acid, but not d-mannose. SQM displayed only 5-fold selectivity in terms of efficiency (/) for SQ versus the glycolysis intermediate Glc-6-P; however, its proficiency [/(/)] for SQ was 17 000-fold better than for Glc-6-P, revealing that SQM preferentially stabilizes the SQ transition state.

摘要

细菌的糖基硫解途径可代谢硫酸奎诺糖 (SQ) 或其糖苷,生成用于细胞初级代谢的三碳代谢物和从细胞中排出的三碳磺酸化物。编码类似于 Embden-Meyerhof-Parnas 或 Entner-Doudoroff (ED) 途径的糖基硫解操纵子包含一个未被表征的基因 (在 中;在 中),该基因在 SQ 存在时被上调,被注释为醛糖 1-差向异构酶,可能编码 SQ 差向异构酶。我们的序列分析和结构建模证实,这些蛋白具有差向异构酶样的活性位点,具有保守的催化残基。我们过表达了来自 (SQM) 的 sulfo-ED 操纵子的同源物,并首次使用它证明了 SQ 差向异构酶活性。这是通过核磁共振交换光谱学完成的,该方法允许在平衡时两种 SQ 差向异构体之间的磁化进行化学交换。SQM 还催化具有赤道 2-羟基的各种醛己糖的差向异构化,包括 d-半乳糖、d-葡萄糖、d-葡萄糖-6-磷酸 (Glc-6-P) 和 d-葡萄糖醛酸,但不包括 d-甘露糖。SQM 在 SQ 与糖酵解中间产物 Glc-6-P 的效率 (/) 方面仅表现出 5 倍的选择性;然而,其对 SQ 的效率 [/(/)] 比 Glc-6-P 高 17000 倍,表明 SQM 优先稳定 SQ 过渡态。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/a7baf88b4d99/BCJ-475-1371-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/749b01a63898/BCJ-475-1371-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/6f2938c79585/BCJ-475-1371-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/c448a1df91a0/BCJ-475-1371-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/95e410b60a0e/BCJ-475-1371-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/9c1fdb98ce92/BCJ-475-1371-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/a7baf88b4d99/BCJ-475-1371-g0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/749b01a63898/BCJ-475-1371-g0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/6f2938c79585/BCJ-475-1371-g0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/c448a1df91a0/BCJ-475-1371-g0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/95e410b60a0e/BCJ-475-1371-g0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/9c1fdb98ce92/BCJ-475-1371-g0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c270/5902678/a7baf88b4d99/BCJ-475-1371-g0006.jpg

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