Doll Kenneth M, Finke Richard G
Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523, USA.
Inorg Chem. 2004 Apr 19;43(8):2611-23. doi: 10.1021/ic030141c.
A reinvestigation of an earlier Ph.D. thesis (Sirovatka, J. M. Ph.D. Thesis, Colorado State University, Fort Collins, CO, 1999) is reported herein. That thesis examined the thermolysis reaction of AdoCbi(+)BF(4)(-) in ethylene glycol solution with exogenous bases, N-methylimidazole (N-Me-Im) and the sterically hindered 1,2-dimethylimidazole, (1,2-Me(2)-Im), 2-methylpyridine (2-Me-py), and 2,6-dimethylpyridine (2,6-Me(2)-py). In the present work, multiple purities of each base have been utilized as a check to see if impurities in the nitrogenous bases are causing the observed homolysis and heterolysis product distributions as others have implied (Trommel, J. S.; Warncke, K.; Marzilli, L. G. J. Am. Chem. Soc. 2001, 123, 3358). The "impurity hypothesis" is disproven by a series of results, including the following: N-Me-Im displays an invariant 52 +/- 10% heterolysis and the 1,2-Me(2)-Im system displays an invariant 83 +/- 7% heterolysis as a function of different base purification methods. Moreover, 2-Me-py and 2,6-Me(2)-py also display an invariant approximately 16 +/- 5% heterolysis as a function of different purification methods. What is responsible for the high levels of Co-C heterolysis in the AdoCbi(+) plus sterically bulky base thermolyses was uncovered via a revisitation of our four, earlier alternative hypotheses for the enhanced Co-C heterolysis (Sirovatka, J. M.; Finke, R. G. Inorg. Chem. 1999, 38, 1697). Our prior number one alternative hypothesis is shown to be correct: the added bases simply deprotonate the ethylene glycol solvent, forming ethylene glycolate anion and base-H(+)() as the key agents behind the previously ill-understood Co-C heterolyses. Also reported are Co(II)Cbi(+) titrations with five bases (1,2-Me(2)-Im, N-Me-Im, pyridine, 2-MePy, and 2,6-Me(2)-py). These experiments confirm Marzilli and co-workers' (op. cit.) results by showing that sterically hindered bases do not bind to Co(II)Cbi(+); therefore, Co(II)Cbi(+) EPR literature showing binding of bulky pyridines is erroneous as is the previously reported binding of bulky pyridine bases to Co(II)Cbi(+) by UV-vis spectroscopy (Sirovatka, J. Ph.D. Thesis, op. cit.). Also reported is our current best synthesis and purification of AdoCbi(+)BF(4)(-), work that builds off our 1987 synthesis of AdoCbi(+)BF(4)(-) (Hay, B. P.; Finke, R. G. J. Am. Chem. Soc. 1987, 109, 8012). Finally, the multiple, compounding errors which have caused problems in this project are listed, notably errors in the protein X-ray crystallography literature, the EXAFS literature, the Co(II)Cbi(+) plus bulky-bases EPR literature, the misleading B(12)-model literature, the erroneous experimental work (Sirovatka, op. cit.) and thus incorrect conclusions in one of our prior papers, as well as the erroneous implications in parts of the Marzilli and co-workers paper (op. cit.). It is hoped that a forthright reporting of these errors will help others avoid similar mistakes in the future when studying complex, bioinorganic systems.
本文报道了对一篇早期博士论文(西罗瓦特卡,J.M. 博士论文,科罗拉多州立大学,柯林斯堡,科罗拉多,1999年)的重新研究。该论文研究了腺苷钴胺阳离子四氟硼酸盐(AdoCbi(+)BF(4)(-))在乙二醇溶液中与外源碱(N - 甲基咪唑(N - Me - Im)、空间位阻较大的1,2 - 二甲基咪唑((1,2 - Me(2)-Im))、2 - 甲基吡啶(2 - Me - py)和2,6 - 二甲基吡啶(2,6 - Me(2)-py))的热解反应。在本研究中,使用了每种碱的多种纯度来检验含氮碱中的杂质是否如其他人所暗示的那样导致了观察到的均裂和异裂产物分布(特罗梅尔,J.S.;瓦尔克,K.;马尔齐利,L.G. 《美国化学会志》2001年,123卷,3358页)。一系列结果反驳了“杂质假说”,包括以下几点:N - Me - Im的异裂率为52±10%,不受碱纯化方法的影响;1,2 - Me(2)-Im体系的异裂率为83±7%,同样不受不同纯化方法的影响。此外,2 - Me - py和2,6 - Me(2)-py的异裂率也约为16±5%,不受不同纯化方法的影响。通过重新审视我们之前提出的关于增强Co - C异裂的四个替代假说(西罗瓦特卡,J.M.;芬克,R.G. 《无机化学》1999年,38卷,1697页),揭示了AdoCbi(+)与空间位阻大的碱热解反应中高程度Co - C异裂的原因。我们之前的第一个替代假说被证明是正确的:添加的碱只是使乙二醇溶剂去质子化,形成乙醇酸根阴离子和碱 - H(+),这是之前理解不足的Co - C异裂背后的关键因素。还报道了用五种碱(1,2 - Me(2)-Im、N - Me - Im、吡啶、2 - MePy和2,6 - Me(2)-py)对Co(II)Cbi(+)进行的滴定。这些实验证实了马尔齐利及其同事(同前引)的结果,表明空间位阻大的碱不与Co(II)Cbi(+)结合;因此,Co(II)Cbi(+)的电子顺磁共振(EPR)文献中显示大体积吡啶结合的内容是错误的,之前通过紫外 - 可见光谱法报道的大体积吡啶碱与Co(II)Cbi(+)的结合也是错误的(西罗瓦特卡,J. 博士论文,同前引)。还报道了我们目前对AdoCbi(+)BF(4)(-)的最佳合成和纯化方法,这项工作基于我们1987年合成AdoCbi(+)BF(4)(-)的方法(海伊,B.P.;芬克,R.G. 《美国化学会志》1987年,109卷,8012页)。最后,列出了在这个项目中导致问题的多个复合错误,特别是蛋白质X射线晶体学文献、扩展X射线吸收精细结构(EXAFS)文献、Co(II)Cbi(+)加空间位阻大的碱的EPR文献、有误导性的维生素B12模型文献、错误的实验工作(西罗瓦特卡,同前引),因此我们之前一篇论文中的结论也是错误的,以及马尔齐利及其同事论文(同前引)部分内容中的错误暗示。希望坦率地报告这些错误将有助于其他人在未来研究复杂的生物无机系统时避免类似的错误。