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利用病毒编码的RNA沉默抑制因子探究微小RNA和小干扰RNA途径。

Probing the microRNA and small interfering RNA pathways with virus-encoded suppressors of RNA silencing.

作者信息

Dunoyer Patrice, Lecellier Charles-Henri, Parizotto Eneida Abreu, Himber Christophe, Voinnet Olivier

机构信息

Institut de Biologie Moléculaire des Plantes du Centre National de la Recherche Scientifique, 67084 Strasbourg Cedex, France.

出版信息

Plant Cell. 2004 May;16(5):1235-50. doi: 10.1105/tpc.020719. Epub 2004 Apr 14.

Abstract

In plants, small interfering RNAs (siRNAs) and microRNAs (miRNAs) are effectors of RNA silencing, a process involved in defense through RNA interference (RNAi) and in development. Plant viruses are natural targets of RNA silencing, and as a counterdefensive strategy, they have evolved highly diverse silencing suppressor proteins. Although viral suppressors are usually thought to act at distinct steps of the silencing machinery, there had been no consensus system so far that allowed a strict side-by-side analysis of those factors. We have set up such a system in Arabidopsis thaliana and used it to compare the effects of five unrelated viral silencing suppressors on the siRNA and miRNA pathways. Although all the suppressors inhibited RNAi, only three of them induced developmental defects, indicating that the two pathways are only partially overlapping. These developmental defects were remarkably similar, and their penetrance correlated with inhibition of miRNA-guided cleavage of endogenous transcripts and not with altered miRNA accumulation per se. Among the suppressors investigated, the tombusviral P19 protein coimmunoprecipitated with siRNA duplexes and miRNA duplexes corresponding to the primary cleavage products of miRNA precursors. Thus, it is likely that P19 prevents RNA silencing by sequestering both classes of small RNAs. Moreover, the finding here that P19 binds siRNAs and suppresses RNAi in Hela cells also suggests that this factor may be useful to dissect the RNA silencing pathways in animals. Finally, the differential effects of the silencing suppressors tested here upon other types of Arabidopsis silencing-related small RNAs revealed a surprising variety of biosynthetic and, presumably, functional pathways for those molecules. Therefore, silencing suppressors are valuable probes of the complexity of RNA silencing.

摘要

在植物中,小干扰RNA(siRNA)和微小RNA(miRNA)是RNA沉默的效应因子,这一过程涉及通过RNA干扰(RNAi)进行防御以及参与植物发育过程。植物病毒是RNA沉默的天然靶标,作为一种反防御策略,它们进化出了高度多样的沉默抑制蛋白。尽管通常认为病毒抑制因子在沉默机制的不同步骤发挥作用,但迄今为止还没有一个共识系统能够对这些因子进行严格的并列分析。我们在拟南芥中建立了这样一个系统,并利用它来比较五种不相关的病毒沉默抑制因子对siRNA和miRNA途径的影响。尽管所有的抑制因子都抑制了RNAi,但其中只有三种诱导了发育缺陷,这表明这两条途径只是部分重叠。这些发育缺陷非常相似,其发生率与miRNA引导的内源性转录本切割的抑制相关,而与miRNA本身积累的改变无关。在所研究 的抑制因子中,番茄丛矮病毒P19蛋白与对应于miRNA前体初级切割产物的siRNA双链体和miRNA双链体共免疫沉淀。因此,P19可能通过隔离这两类小RNA来阻止RNA沉默。此外,这里发现P19在HeLa细胞中结合siRNA并抑制RNAi,这也表明该因子可能有助于剖析动物中的RNA沉默途径。最后,这里测试的沉默抑制因子对拟南芥其他类型的沉默相关小RNA的不同影响揭示了这些分子在生物合成以及可能的功能途径方面惊人的多样性。因此,沉默抑制因子是研究RNA沉默复杂性的有价值的探针。

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