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底物对细胞色素P450cam血红素活性位点构象稳定性的作用:温度和低浓度变性剂的影响

Role of substrate on the conformational stability of the heme active site of cytochrome P450cam: effect of temperature and low concentrations of denaturants.

作者信息

Murugan R, Mazumdar Shyamalava

机构信息

Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, 400005, Mumbai, India.

出版信息

J Biol Inorg Chem. 2004 Jun;9(4):477-88. doi: 10.1007/s00775-004-0544-1. Epub 2004 May 4.

Abstract

The effect of 1R-camphor on the conformational stability of the heme active site of cytochrome P450cam has been investigated. The absorption spectra of the heme moiety showed the presence of two hitherto unknown intermediates formed at low urea concentrations or during small temperature perturbations. The corresponding thermodynamic parameters were obtained by global fitting of the experimental data to a generalized sequential unfolding model at different wavelengths, which showed that the active conformation of the enzyme is stabilized by binding of the substrate at the active site. Circular-dichroism spectra of the enzyme in the visible- and far-UV region were studied to identify the critical range of denaturant concentration and the temperature at which the tertiary structure around the heme center was affected with almost no change in the secondary structure of the enzyme. This critical range of urea concentration was 0-2.8 M in the presence of camphor and 0-1.5 M in the absence of camphor. The tertiary structure of the enzyme was found to undergo conformational change in the temperature range 20-60 degrees C in the presence of the substrate and 20-47 degrees C in its absence. The spectral assignments of the intermediate species of the heme active site with the intact secondary structure of the enzyme were made by deconvolution of the Soret absorption spectra, and the results were analyzed to determine stabilization of the heme active-site geometry by 1R-camphor. Results showed that subtle conformational changes due to melting of the tertiary contacts in the active site lead to formation of intermediates which are coordinatively similar to the native enzyme. Analogous intermediate species might be responsible for leakage in the redox catalytic cycle of the enzyme.

摘要

研究了1R-樟脑对细胞色素P450cam血红素活性位点构象稳定性的影响。血红素部分的吸收光谱显示,在低尿素浓度或小温度扰动期间形成了两种迄今未知的中间体。通过将实验数据全局拟合到不同波长下的广义顺序展开模型,获得了相应的热力学参数,结果表明底物结合到活性位点可稳定酶的活性构象。研究了该酶在可见光和远紫外区域的圆二色光谱,以确定变性剂浓度和温度的临界范围,在此范围内血红素中心周围的三级结构受到影响,而酶的二级结构几乎没有变化。在存在樟脑的情况下,尿素浓度的临界范围为0-2.8 M,在不存在樟脑的情况下为0-1.5 M。发现在存在底物的情况下,酶的三级结构在20-60℃的温度范围内发生构象变化,在不存在底物的情况下在20-47℃的温度范围内发生构象变化。通过对Soret吸收光谱进行反褶积,对具有完整二级结构的酶的血红素活性位点中间物种进行了光谱归属,并对结果进行分析以确定1R-樟脑对血红素活性位点几何结构的稳定作用。结果表明,活性位点三级接触的熔化导致的细微构象变化会形成与天然酶配位相似的中间体。类似的中间物种可能是该酶氧化还原催化循环中泄漏的原因。

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