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醇类对樟脑与细胞色素P450cam结合的影响:光谱学和停流瞬态动力学研究

Effect of alcohols on binding of camphor to cytochrome P450cam: spectroscopic and stopped flow transient kinetic studies.

作者信息

Murugan R, Mazumdar Shyamalava

机构信息

Department of Chemical Sciences, Tata Institute of Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India.

出版信息

Arch Biochem Biophys. 2006 Nov 15;455(2):154-62. doi: 10.1016/j.abb.2006.09.007. Epub 2006 Sep 29.

Abstract

Addition of alcohols to cytochrome P450cam (CYP101) was shown to release the substrate camphor from the heme pocket of the enzyme. The release of the substrate was found to be caused both due to increased solubility of the substrate in solution in presence of alcohol and due to change in the tertiary structure of the active site of the enzyme. The far-UV CD and near-UV CD spectra reveal that addition of alcohols to cytochrome P450cam cause a small change in the secondary structural elements but a significant change in the tertiary structural organization of this enzyme. The CD spectra at the heme region at various concentrations of alcohols indicate a substantial change in the tertiary structural organization around the heme moiety too. The equilibrium constant associated with the binding of camphor to Cyt P450cam is strongly dependent on the concentration of alcohols and the corresponding free energy associated with the binding is found to scale linearly with the concentration of alcohols. Kinetic experiments on binding of camphor to Cyt P450cam show that both k(on) and k(off) rate constants are strongly affected by addition of alcohols suggesting that alcohol expel camphor out of the heme cavity of Cyt P450cam by affecting tertiary structure of Cyt P450cam as well as by modifying the solubility properties of camphor in aqueous medium.

摘要

已表明向细胞色素P450cam(CYP101)中添加醇类会使底物樟脑从该酶的血红素口袋中释放出来。发现底物的释放是由于在醇存在下底物在溶液中的溶解度增加以及由于酶活性位点三级结构的变化所致。远紫外圆二色光谱和近紫外圆二色光谱表明,向细胞色素P450cam中添加醇类会导致二级结构元件发生微小变化,但会使该酶的三级结构组织发生显著变化。在不同醇浓度下血红素区域的圆二色光谱也表明血红素部分周围的三级结构组织发生了实质性变化。与樟脑与细胞色素P450cam结合相关的平衡常数强烈依赖于醇的浓度,并且发现与结合相关的相应自由能与醇的浓度呈线性关系。关于樟脑与细胞色素P450cam结合的动力学实验表明,k(on)和k(off)速率常数都受到醇类添加的强烈影响,这表明醇类通过影响细胞色素P450cam的三级结构以及改变樟脑在水性介质中的溶解特性,将樟脑从细胞色素P450cam的血红素腔中排出。

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